Files in bzhanglab/WebGestaltR
Gene Set Analysis Toolkit WebGestaltR
.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/bug-report.md
.github/ISSUE_TEMPLATE/installation-issue.md
.github/ISSUE_TEMPLATE/question.md
.github/ISSUE_TEMPLATE/r-vs--rust-difference.md
.github/workflows/check-standard.yaml
.github/workflows/pkgdown.yaml
.github/workflows/windows-compile.yml
.gitignore
.lintr
DESCRIPTION
NAMESPACE
NEWS.md
R/WebGestaltR-package.R
R/WebGestaltR.R
R/WebGestaltRBatch.R
R/WebGestaltRGsea.R
R/WebGestaltRMultiOmics.R
R/WebGestaltRMultiomicsGSEA.R
R/WebGestaltRMultiomicsOra.R
R/WebGestaltRNta.R
R/WebGestaltROra.R
R/affinityPropagation.R
R/cacheFile.R
R/createMetaReport.R
R/createMetaSummaryReport.R
R/createNtaReport.R
R/createReport.R
R/dagUtils.R
R/enrichResultSection.R
R/errorMessage.R
R/extendr-wrappers.R
R/formatCheck.R
R/goSlimReport.R
R/goSlimSummary.R
R/gseaEnrichment.R
R/idMapping.R
R/idMappingGene.R
R/idMappingMetabolites.R
R/idMappingPhosphosite.R
R/idMappingUtils.R
R/idToSymbol.R
R/kMedoid.R
R/linkModification.R
R/listArchiveURL.R
R/listGeneSet.R
R/listIdType.R
R/listOrganism.R
R/listReferenceSet.R
R/loadGeneList.R
R/loadGeneSet.R
R/mergeDuplicate.R
R/metaEnrichResultSection.R
R/metaLinkModification.R
R/metaSummaryDescription.R
R/multiGseaEnrichment.R
R/multiOmicsUtils.R
R/multiOraEnrichment.R
R/multiswGsea.R
R/oraEnrichment.R
R/randomWalkEnrichment.R
R/readGmt.R
R/reportUtils.R
R/summaryDescription.R
R/swGsea.R
R/weightedSetCover.R
README.md
WebGestaltR.Rproj
_pkgdown.yml
build_hash.py
configure
configure.win
dev_install
inst/CITATION
inst/extdata/GOSlimExample.txt
inst/extdata/GeneRankList.rnk
inst/extdata/exampleGMT.gmt
inst/extdata/interestingGenes.txt
inst/extdata/referenceGenes.txt
inst/templates/enrichResultSection.mustache
inst/templates/footer.mustache
inst/templates/goSlimReport.mustache
inst/templates/header.mustache
inst/templates/metaEnrichResultSection.mustache
inst/templates/metaSummary.mustache
inst/templates/meta_analysis_template.mustache
inst/templates/meta_partial_template.mustache
inst/templates/meta_template.mustache
inst/templates/networkContent.mustache
inst/templates/ntaTemplate.mustache
inst/templates/summary.mustache
inst/templates/summaryGsea.mustache
inst/templates/summaryOra.mustache
inst/templates/template.mustache
install
logo.svg
man/WebGestaltR.Rd
man/WebGestaltRMultiOmics.Rd
man/WebGestaltRMultiOmicsGSEA.Rd
man/WebGestaltRMultiOmicsOra.Rd
man/affinityPropagation.Rd
man/cacheUrl.Rd
man/createMetaReport.Rd
man/createMetaSummaryReport.Rd
man/createNtaReport.Rd
man/createReport.Rd
man/enrichResultSection.Rd
man/expandDag.Rd
man/fill_input_data_frame.Rd
man/formatCheck.Rd
man/goSlimSummary.Rd
man/gsea_rust.Rd
man/idMapping.Rd
man/jaccardSim.Rd
man/kMedoid.Rd
man/keepRep.Rd
man/linkModification.Rd
man/listArchiveUrl.Rd
man/listGeneSet.Rd
man/listIdType.Rd
man/listOrganism.Rd
man/listReferenceSet.Rd
man/loadGeneSet.Rd
man/metaEnrichResultSection.Rd
man/metaLinkModification.Rd
man/metaSummaryDescription.Rd
man/multiswGsea.Rd
man/ora_rust.Rd
man/prepareGseaInput.Rd
man/prepareInputMatrixGsea.Rd
man/readGmt.Rd
man/rust_multiomics_ora.Rd
man/specificParameterSummaryGsea.Rd
man/specificParameterSummaryOra.Rd
man/summaryDescription.Rd
man/swGsea.Rd
man/weightedSetCover.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
src/.gitignore
src/Makevars
src/Makevars.in
src/Makevars.ucrt
src/Makevars.win.in
src/WebGestaltR-win.def
src/config.toml
src/entrypoint.c
src/rust/Cargo.lock
src/rust/Cargo.toml
src/rust/src/lib.rs
src/rust/vendor.sh
src/rust/vendor.tar.xz
tools/configure.R
vignettes/.gitignore
vignettes/Installation.Rmd
