API for campbio/scruff
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)

Global functions
.alignRsubreadUnit Source code
.bamIterator Source code
.checkCellBarcodes Source code
.checkCores Source code
.checkGTF Source code
.countUmiUnit Source code
.demultiplexUnit Source code
.fastqIterator Source code
.getAlignmentFilePaths Source code
.getGeneAnnotation Source code
.gtfReadDb Source code
.logMessages Source code
.plotAvgReadsPerCorrectedUMI Source code
.plotAvgReadsPerUMI Source code
.plotCounts Source code
.plotFracProteinCodingGenes Source code
.plotFracProteinCodingTranscripts Source code
.plotGeneToGenomeFraction Source code
.plotGeneToTotalFraction Source code
.plotGenes Source code
.plotGenesPerMillionReads Source code
.plotGenomeReadsFraction Source code
.plotMedReadsPerCorrectedUMI Source code
.plotMedReadsPerUMI Source code
.plotMtCounts Source code
.plotMtCountsFraction Source code
.plotReadsMappedToGenes Source code
.plotReadsMappedToGenome Source code
.plotTotalReads Source code
.propmappedWrapper Source code
.removeLastExtension Source code
.stripLeadingUnderscore Source code
.tenxBamqcUnit Source code
.themePublication Source code
.toBam Source code
alignRsubread Man page Source code
bamExample Man page
barcodeExample Man page
countUMI Man page Source code
demultiplex Man page Source code
gview Man page Source code
qcplots Man page Source code
rview Man page Source code
sceExample Man page
scruff Man page Source code
tenxBamqc Man page Source code
validCb Man page
campbio/scruff documentation built on May 13, 2019, 9:51 p.m.