Files in carolinafishes/toast
Transcriptome Ortholog Alignment Sequence Tools

.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/.DS_Store
R/CompleteCoverage.R R/EntrezDownload.R R/FastaIntoPhy.R R/MafftOrientAlign.R R/MissingDataTable.R R/MissingStreambar.R R/MissingValue.R R/NexIntoFas.R R/PartitionTable.R R/PhyIntoFasta.R R/PhyIntoNex.R R/PhyloMissmap.R R/PruneSuperAlign.R R/SuperAlign.R R/ThresholdDataTable.R R/ThresholdExtract.R R/ToastGoSlim.R R/ToastGoSlim_testingFunction.R R/VisTreeData.R R/VisualizeCoverage (Autosaved).R R/VisualizeCoverage.R R/VisualizeCoverageThreshold.R R/VisualizePBR.R R/VisualizeTaxonomyInteractive.R R/VisualizeThreshold.R R/extractBuscoSeqsComp.R R/extractBuscoSeqsDup.R R/extractBuscoSeqsFrag.R R/extractBuscos.R R/geneTreeFilter.R R/missingDataSummary.R README.md TOAST_tutorial.R legacy_functions/ExtractBuscoSeqs.R
legacy_functions/ExtractBuscoSeqs.Rd
legacy_functions/ParseBuscoResults.R
legacy_functions/ParseBuscoResults.Rd
legacy_functions/ParseBuscoResultsThreshold.R legacy_functions/RunBusco.R
legacy_functions/RunBusco.Rd
man/.DS_Store
man/CompleteCoverage.Rd man/EntrezDownload.Rd man/FastaIntoPhy.Rd man/MafftOrientAlign.Rd man/MissingDataTable.Rd man/MissingStreambar.Rd man/NexIntoFas.Rd man/PartitionTable.Rd man/PhyIntoFasta.Rd man/PhyIntoNex.Rd man/PhyloMissmap.Rd man/SuperAlign.Rd man/ThresholdDataTable.Rd man/ThresholdExtract.Rd man/ToastGoSlim.Rd man/VisualizeCoverage.Rd man/VisualizePBR.Rd man/VisualizeTaxonomyInteractive.Rd man/VisualizeThreshold.Rd man/extractBuscoSeqsComp.Rd man/extractBuscoSeqsDup.Rd man/extractBuscoSeqsFrag.Rd man/extractBuscos.Rd man/geneTreeFilter.Rd
sample_data/350_laurasiatheria_odb9.tar.gz
sample_data/cetacea_species.nwk
sample_data/cetacean_taxonomy.csv
sample_data/missing_data.csv
sample_data/missing_data.tsv
sample_data/sample_data.tar.gz
toast.Rproj
carolinafishes/toast documentation built on June 28, 2023, 8:10 p.m.