API for cbg-ethz/GeneAccord
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients

Global functions
GeneAccord Man page Source code
all_genes_tbl Man page
avg_rates_m Man page
build_null_test_statistic Man page Source code
clone_tbl_all_pats_all_trees Man page
compute_rates_clon_excl Man page Source code
compute_test_stat_avg_rate Man page Source code
convert_ensembl_to_reactome_pw_tbl Man page Source code
create_ensembl_gene_tbl_hg Man page Source code
create_tbl_ent_clones Man page Source code
create_tbl_tree_collection Man page Source code
ecdf_list Man page
ecdf_lr_test_clon_excl_avg_rate Man page Source code
ensembl_to_hgnc Man page Source code
ensembl_to_reactome Man page Source code
ensg_reactome_path_map Man page
ensmusg_reactome_path_map Man page
extract_num_clones_tbl Man page Source code
generate_ecdf_test_stat Man page Source code
generate_test_stat_hist Man page Source code
get_hist_clon_excl Man page Source code
get_hist_clon_excl_this_pat_this_pair Man page Source code
get_rate_diff_branch_ent_pair Man page Source code
heatmap_clones_gene_pat Man page Source code
hgnc_to_ensembl Man page Source code
is_diff_branch_ent_pair Man page Source code
list_of_clon_excl_all_pats Man page
list_of_num_trees_all_pats Man page
map_pairs_to_hgnc_symbols Man page Source code
merge_clones_identical_ents Man page Source code
pairs_in_patients_hist Man page Source code
plot_ecdf_test_stat Man page Source code
plot_rates_clon_excl Man page Source code
take_pairs_and_get_patients Man page Source code
vis_pval_distr_num_pat Man page Source code
write_res_pairs_to_disk Man page Source code
cbg-ethz/GeneAccord documentation built on Aug. 12, 2018, 12:14 a.m.