The RNABC pipeline is used for data processing in “Using microarray-based subtyping methods for breast cancer in the era of high-throughput RNA sequencing” by Pedersen C. B., Nielsen, F. C., Rossing, M., and Olsen, L. R., 2018. The steps include running FastQC for quality control, kallisto for mapping and processing by quantile normalization and batch correction. The last step is classification at sample-level using the CITBCMST scheme by Guedj et al. 2012.
|Bioconductor views||citbcmst preprocessCore scater sva|
|Package repository||View on GitHub|
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