README.md

In cboettig/AdaptiveDynamics: Waiting Times for Evolutionary Branching in Adaptive Dynamics

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A Fast C++ implementation with an R interface to simulate ecological and evolutionary dynamics of adaptive branching in a full Gillespie simulation following the model of Dieckmann and Doebeli (1999, https://doi.org/10.1038/22521). This software was developed under as a IIASA YSSP 2009 summer project under the guidance of Ulf Dieckmann and Rupert Mazzucco.

Background on the project apperas in the following notebook entries:

• http://www.carlboettiger.info/2010/04/15/branching-paper.html
• http://www.carlboettiger.info/2009/07/28/branching-times.html
• http://www.carlboettiger.info/2009/08/25/drift-effects.html
• http://www.carlboettiger.info/2010/05/01/coexistence-of-the-early-dimorphism.html
• Also see other notes: http://www.carlboettiger.info/2010/tags.html#adaptive-dynamics

INSTALL:

Requires: gcc+STL (build-essential), libpngwriter0-dev, libgsl0-dev, libiomp-dev

R-package install: R CMD INSTALL .

Free-standing C++ installation:

cd src/
make
make parallel

NOTES:

• branch.cpp and basicmethods.cpp are depricated currently.
• ToDo: Should replace all macro constants with proper parameters data structure

cboettig/AdaptiveDynamics documentation built on May 13, 2019, 2:06 p.m.