Files in cdriveraus/ctsem
Continuous Time Structural Equation Modelling
.Rbuildignore
.github/.gitignore
.github/workflows/check-standard.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/covml.R
R/ctACF.R
R/ctCheckFit.R
R/ctCompare.R
R/ctDataHelp.R
R/ctDeintervalise.R
R/ctDiscretePars.R
R/ctDiscretiseData.R
R/ctExtractComplexMatrix.R
R/ctFitMultiModel.R
R/ctGenerate.R
R/ctIndplot.R
R/ctIntervalise.R
R/ctJacobian.R
R/ctKalman.R
R/ctLOO.R
R/ctLabel.R
R/ctLongtowide.r
R/ctModel.R
R/ctModelHigherOrder.R
R/ctModelLatex.R
R/ctPlotArray.R
R/ctStanContinuousPars.R
R/ctStanData.R
R/ctStanFit.R
R/ctStanGenerate.R
R/ctStanGenerateFromFit.R
R/ctStanKalman.R
R/ctStanModel.R
R/ctStanModelWriter.R
R/ctStanParMatrices.R
R/ctStanPlotPost.R
R/ctStanPostPredict.R
R/ctStanProfileCI.R
R/ctStanTIpredeffects.R
R/ctSummarise.R
R/ctTIpredAuto.R
R/ctTransforms.R
R/ctWideToLong.R
R/ctdataupdate.R
R/ctsem-package.R
R/ctsemUtils.R
R/ctsmupdate.R
R/databasedTIpreds.R
R/extract.ctStanFit.R
R/isdiag.R
R/listOfMatrices.R
R/modelchecking.R
R/plot.ctStanFit.R
R/plot.ctStanModel.R
R/plothelpers.R
R/priorcheck.R
R/sdpcor2cov.R
R/sgd.R
R/stanWplot.R
R/stan_checkdivergences.R
R/stan_confidenceRegion.R
R/stan_postcalc.R
R/stan_unconstrainsamples.R
R/stanmodels.R
R/stanoptimis.R
R/summary.ctStanFit.R
R/tformshapes.R
README.md
README.rmd
configure
configure.win
ctsem.Rproj
data/AnomAuth.rda
data/Oscillating.rda
data/ctExample1.rda
data/ctExample1TIpred.rda
data/ctExample2.rda
data/ctExample3.rda
data/ctExample4.rda
data/ctstantestdat.rda
data/ctstantestfit.rda
data/datastructure.rda
data/longexample.rda
inst/CITATION
inst/include/stan_meta_header.hpp
inst/stan/cov.stan
inst/stan/ctsm.bak
inst/stan/ctsm.stan
inst/stan/ctsmSimple.bak
inst/stan/ctsmgen.bak
inst/stan/ctsmgen.stan
inst/stan/include/license.stan
man/AnomAuth.Rd
man/Oscillating.Rd
man/ctACF.Rd
man/ctACFresiduals.Rd
man/ctAddSamples.Rd
man/ctCheckFit.Rd
man/ctChisqTest.Rd
man/ctCollapse.Rd
man/ctDeintervalise.Rd
man/ctDensity.Rd
man/ctDiscretiseData.Rd
man/ctDocs.Rd
man/ctExample1.Rd
man/ctExample1TIpred.Rd
man/ctExample2.Rd
man/ctExample2level.Rd
man/ctExample3.Rd
man/ctExample4.Rd
man/ctExtract.Rd
man/ctFit.Rd
man/ctFitMultiModel.Rd
man/ctGenerate.Rd
man/ctIndplot.Rd
man/ctIntervalise.Rd
man/ctKalman.Rd
man/ctLOO.Rd
man/ctLongToWide.Rd
man/ctModel.Rd
man/ctModelHigherOrder.Rd
man/ctModelLatex.Rd
man/ctPlotArray.Rd
man/ctPoly.Rd
man/ctPostPredData.Rd
man/ctPostPredPlots.Rd
man/ctResiduals.Rd
man/ctStanContinuousPars.Rd
man/ctStanDiscretePars.Rd
man/ctStanDiscreteParsPlot.Rd
man/ctStanFit.Rd
man/ctStanFitUpdate.Rd
man/ctStanGenerate.Rd
man/ctStanGenerateFromFit.Rd
man/ctStanKalman.Rd
man/ctStanModel.Rd
man/ctStanParnames.Rd
man/ctStanPlotPost.Rd
man/ctStanPostPredict.Rd
man/ctStanSubjectPars.Rd
man/ctStanTIpredeffects.Rd
man/ctStanUpdModel.Rd
man/ctWideNames.Rd
man/ctWideToLong.Rd
man/ctsem-package.Rd
man/ctstantestdat.Rd
man/ctstantestfit.Rd
man/datastructure.Rd
man/inv_logit.Rd
man/isdiag.Rd
man/log1p_exp.Rd
man/longexample.Rd
man/plot.ctKalmanDF.Rd
man/plot.ctStanFit.Rd
man/plot.ctStanModel.Rd
man/plotctACF.Rd
man/sdpcor2cov.Rd
man/stanWplot.Rd
man/stan_checkdivergences.Rd
man/stan_reinitsf.Rd
man/stan_unconstrainsamples.Rd
man/standatact_specificsubjects.Rd
man/stanoptimis.Rd
man/summary.ctStanFit.Rd
tests/testthat.R
tests/testthat/test-bivariatetrait_hmc.R
tests/testthat/test-bootHessian.R
tests/testthat/test-corrcheck.R
tests/testthat/test-ctLOO.R
tests/testthat/test-ctRaschExampleTest.R
tests/testthat/test-dtVct.R
tests/testthat/test-fixedvalsunspot.R
tests/testthat/test-intervalise.R
tests/testthat/test-knownFits.R
tests/testthat/test-nonlinearVlinear.R
tests/testthat/test-reshaping.R
tests/testthat/test-runExamples.R
tests/testthat/test-stantipred.R
tests/testthat/test-sunspots.R
tests/testthat/test-tdeffectvariation_covtest.R
tests/testthat/test-timevarying.R
tests/testthat/test-ukfpoptest.R
tests/testthat/test_behavGenNLcor.R
vignettes/compactPDF.R
vignettes/hierarchicalmanual.pdf
vignettes/hierarchicalmanual.rnw
vignettes/hierarchicalrefs.bib
