README.md

In changwn/DeconvoLib: Comprehensive Tissue Deconvolution Method Library

DeconvoLib

Comprehensive Tissue Deconvolution Method Library

Installation

library("devtools")
devtools::install_github("changwn/DeconvoLib")

Example

library("DeconvoLib")
# coming soon
DeconvoLib::   #please type left code and press "Tab" on your keyboard, you can see the all variables/function in this R package

Collected Deconvolution Method List:

2015-CIBERSORT-Robust enumeration of cell subsets from tissue expression profiles https://www.nature.com/articles/nmeth.3337

2016-TIMER-Comprehensive analyses of tumor immunity: implications for cancer immunotherapy. https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1028-7

2017-EPIC-Simultaneous enumeration of cancer and immune cell types from bulk tumor gene expression data. https://elifesciences.org/articles/26476

Questions & Problems

If you have any questions or problems, please feel free to open a new issue here. We will fix the new issue ASAP. You can also email the maintainers and authors below.

• Wennan Chang ([e-mail])

PhD candidate at BDR group, Indiana University School of Medicine

• Chi Zhang ([e-mail])

Assistant Professor

Department of Medical & Molecular Genetics, Indiana University School of Medicine

changwn/DeconvoLib documentation built on Dec. 27, 2019, 2:20 a.m.