charles-plessy/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

Preprocessing of CAGE sequencing data, identification and normalization of transcription start sites and downstream analysis of transcription start sites clusters (promoters).

Getting started

Package details

AuthorVanja Haberle <[email protected]>
Bioconductor views Clustering FunctionalGenomics GeneExpression Normalization Preprocessing Sequencing Transcription Visualization
MaintainerVanja Haberle <[email protected]>, Charles Plessy <[email protected]>
LicenseGPL-3
Version1.25.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("charles-plessy/CAGEr")
charles-plessy/CAGEr documentation built on Nov. 8, 2018, 3:38 p.m.