CTSSclusteringMethod | R Documentation |
Returns or sets the name of the method that was used make tag
clusters from the CTSSs of a CAGEr
object.
CTSSclusteringMethod(object)
## S4 method for signature 'GRangesList'
CTSSclusteringMethod(object)
## S4 method for signature 'CAGEexp'
CTSSclusteringMethod(object)
CTSSclusteringMethod(object) <- value
## S4 replacement method for signature 'GRangesList'
CTSSclusteringMethod(object) <- value
## S4 replacement method for signature 'CAGEexp'
CTSSclusteringMethod(object) <- value
object |
A CAGEr object. |
value |
character |
Vanja Haberle
Charles Plessy
clusterCTSS
Other CAGEr accessor methods:
CTSScoordinatesGR()
,
CTSScumulativesTagClusters()
,
CTSSnormalizedTpmDF()
,
CTSStagCountDF()
,
GeneExpDESeq2()
,
GeneExpSE()
,
consensusClustersGR()
,
expressionClasses()
,
genomeName()
,
inputFilesType()
,
inputFiles()
,
librarySizes()
,
sampleLabels()
,
seqNameTotalsSE()
,
tagClustersGR()
Other CAGEr clusters functions:
CTSScumulativesTagClusters()
,
CustomConsensusClusters()
,
aggregateTagClusters()
,
clusterCTSS()
,
consensusClustersDESeq2()
,
consensusClustersGR()
,
cumulativeCTSSdistribution()
,
plotInterquantileWidth()
,
quantilePositions()
,
tagClustersGR()
CTSSclusteringMethod(exampleCAGEexp)
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