collapseReplicates: Collapse a sample's MALDIquant peak objects into a single...

Description Usage Arguments Value

Description

Collapse a sample's MALDIquant peak objects into a single peak object

Usage

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collapseReplicates(checkedPool, sampleIDs, peakPercentPresence,
  lowerMassCutoff, upperMassCutoff, minSNR, tolerance = 0.002, protein)

Arguments

checkedPool

checked-out pool

sampleIDs

sample IDs of samples to process

peakPercentPresence

peaks in replciates that occurr less frequently than this will be removed

lowerMassCutoff

masses below this will be removed from analyses

upperMassCutoff

masses above this will be removed from analyses

minSNR

minimum SNR a a peak must have to be retained

tolerance

binning tolerance ppm / 10e6

protein

whether to search SQL for protein or small mol spectra

Value

a single trimmed and binned MALDIquant peak object


chasemc/IDBac_App documentation built on May 7, 2019, 9:44 p.m.