README.md

In chedonat/OncoPhase: SOMATIC MUTATION CELLULAR PREVALENCE COMPUTATION

OncoPhase

OncoPhase: Quantification of somatic mutation cellular prevalence using phase information.

Developed in the Ovarian Cancer Cell Laboratory, University of Oxford, United Kingdom.

This package offers a direct method to quantify the cellular prevalence of a somatic mutation using phase information. The method utilizes three sources of information: the phasing information, the copy number variation, and the allele counts. The method is demonstrated to bring more capabilities in Cancer Genomics.

To Download and install the package.

A- Using devtools :

1- If you dont already have devtools installed, proceed to its installation :

install.packages("devtools")

library(devtools)

2- Download, install and launch OncoPhase :

install_github("chedonat/OncoPhase")

library(OncoPhase)

help(OncoPhase)

chedonat/OncoPhase documentation built on May 13, 2019, 3:39 p.m.