NEWS.md

In chengvt/EEM: Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data

EEM v1.1.1.9000 (master branch)

EEM v1.1.1

Minor change

• fix CRAN check's notes on ggplot2

EEM v1.1.0

New features

• Add support for Aqualog .dat file
• Add delScattering2 function
• Add drawEEMgg function
• Add S3 method for c.EEM
• Introduce commonnizeEEM: the function which smooths out the difference dimensions of EEM data

Minor new features

• findLocalMax now supports unfolded matrix
• drawEEM now supports VIP plotting (for the VIP function available at pls package's main site).
• The font size for the group legend box can now be specified using cex.legend in plotScore function.
• Add methods for tbl object in fold
• Automatically replace NA with 0 in unfold

Major change

• No longer support excel file import internally in readEEM

Minor change

• Add showprint argument in findLocalMax to turn on/off the printing.
• For plotScore, up to now, 2 group information can be specified in group variable (ie. plotScore(PCA, group = c(group1, group2))). Now, if there are two group information, it must be specified separately (plotScore(PCA, group = group1, group2 = group2)).
• Change the default value for forth from 0 to 40 for delScattering.
• unfold became faster by not using melt
• forth argument in delScattering had 0 as default value. The value was reset to be 40.

Debug

• cutEEM so that it can deal with values with decimal points.

EEM v1.0.4

New features

• The excitation/emission axis can now be flipped using flipaxis argument in drawEEM.

Minor changes

• findLocalMax returns character vector instead of a data.frame
• deprecated pointsize and use cex instead in plotScore.

chengvt/EEM documentation built on May 13, 2019, 3:51 p.m.