R/spatExtinct-package.R

#' @title Spatial Interpolation of Extinction Dates from Sighting Data
#'
#'
#'
#' @description The spatExtinct package is a tool for spatially-interpolated extinction estimators. The purpose of the package is twofold: to assign likely extinction dates across a landscape, and to identify potential areas of persistence for species of conservation concern with unknown extinction status.
#
#'
#' @name spatExtinct-package
#' @aliases spatExtinct-package spatExtinct
#' @docType package
#' @author Colin Carlson (\email{ccarlson@@sesync.org})
#'
#' @import sExtinct
#' @importFrom graphics axis box image mtext par
#' @importFrom stats pchisq pnorm sd simulate
#' @importFrom utils setTxtProgressBar txtProgressBar
#'
#' @references
#' Carlson, C.J., Bond, A.L. and Burgio, K.R., 2018. Estimating the extinction date of the thylacine with mixed certainty data. Conservation Biology.
#'
#' @references
#' Carlson, C.J., Burgio, K.R., Dallas, T.A. and Bond, A.L. 2018. A novel method using sighting records to reconstruct spatiotemporal patterns of extinction and identify potential zones of rediscovery.
#'
#' @references
#' Solow, A.R. and Beet, A.R., 2014. On uncertain sightings and inference about extinction. Conservation biology, 28(4), pp.1119-1123.
#'
#' @details
#' {\emph{The sun above me and a concrete floor below
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#' Scratch at the chain links, maybe bare my teeth for show
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#' Fed twice a day, I don't go hungry anymore
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#' Feel in my bones just what the future has in store
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#' I pace in circles so the camera will see
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#' Look hard at my stripes, there'll be no more after me
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#' Laze by the shoreline while the sailors disembark
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#' Scratch out a place to sit and rest down in the dark
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#' Smell something burning downwind just a little ways
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#' They set up camp and sing and sweat and work for days
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#' I have no fear of anyone, I'm dumb and wild and free
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#' I am a flightless bird and there'll be no more after me
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#' In Costa Rica in a burrow underground
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#' Climb to the surface, blink my eyes and look around
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#' I'm all alone here as I try my tiny song
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#' Claim my place beneath the sky but I won't be here for long
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#' I sang all night, the moon shone on me through the trees
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#' No brothers left and there'll be no more after me}
#'
#' --The Mountain Goats, "Deuteronomy 2:10"}
#'
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cjcarlson/spatExtinct documentation built on May 25, 2019, 3:26 p.m.