cma2015/PEA: An integrated R toolkit for plant epitranscriptome analysis.
Version 1.1

PEA is an integrated R toolkit that aims to facilitate plant epitranscriptome data analysis. This toolkit contains a comprehensive set of functions for read mapping, CMR (chemical modifications of RNA) calling from epitranscriptome sequencing data, CMR prediction at the transcriptome scale, and CMR annotation (location distribution analysis, motif scanning and discovery, and gene functional enrichment analysis.)

Getting started

Package details

AuthorJingjing Zhai, Chuang Ma and Jie Song
MaintainerJingjing Zhai <[email protected]>
LicenseGPL (>= 2)
Version1.1
URL http://bioinfo.nwafu.edu.cn/software
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("cma2015/PEA")
cma2015/PEA documentation built on Oct. 11, 2018, 12:15 p.m.