API for cma2015/PEA
An integrated R toolkit for plant epitranscriptome analysis.

Global functions
Binary Source code
CMRAnnotation Man page Source code
CMRCalling Man page Source code
G2T Man page Source code Source code
Kmer Source code
PSOL Man page Source code
PSOL_InitialNegativeSelection Source code
PSOL_NegativeExpansion Source code
PseDNC Source code
QCBAM Man page Source code
SlidingWindow Man page Source code
T2G Source code
bam2bed Source code
calDisMat Source code
calculateDistance Source code
classifier Man page Source code
cross_validation Man page Source code
cvSampleIndex Source code
disMat Source code
extractCov Man page Source code
extractSeq Source code
extractSeqs Man page Source code
extractTranscriptID Source code
featureEncoding Man page Source code
findConfidentPosSamples Man page Source code
findPosSamples Source code
findSeed Source code
findUnlabelSamples Man page Source code
find_ClassifierWithMaxAUC Source code
geneID Source code
generateIndex Source code
getUTR Man page Source code Source code
m5Call Source code
motifDetect Man page Source code
motifScan Man page Source code
ntersectGene Source code
ntervalCov Source code
obtain_CV_AUCMat Source code
one_cross_validation Source code
pasteVector Source code
peakCalling Man page Source code
plotROC Man page Source code
predCMR Man page Source code
predictor Source code
pseudoURatio Man page Source code Source code
randomSeed Source code
readMapping Man page Source code
runMACS2 Source code
runTopGO Man page Source code
sample data Man page
searchMotifPos Man page Source code
sub Source code
cma2015/PEA documentation built on Dec. 3, 2018, 9:16 p.m.