Write, Analyze, and Visualize 'BIOM' Data

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/RcppExports.R R/adiv_boxplot.r R/adiv_corrplot.r R/adiv_stats.r R/adiv_table.r R/apcoa.r R/as_rbiom.r R/bdiv_boxplot.r R/bdiv_corrplot.r R/bdiv_heatmap.r R/bdiv_ord_plot.r R/bdiv_ord_table.r R/bdiv_stats.r R/bdiv_table.r R/biom_merge.r R/biom_ply.r R/boxplot_facets.r R/boxplot_layers.r R/boxplot_stats.r R/cache.r R/clustering.r R/convert.r R/corrplot_layers.r R/corrplot_stats.r R/data.r R/distmat_ord_table.r R/distmat_stats.r R/documentation.r R/embed.r R/heatmap_build.r R/import_table.r R/plot_build.r R/plot_facets.r R/plot_heatmap.r R/plot_layers.r R/plot_palettes.r R/plot_provenance.r R/rare_corrplot.r R/rare_multiplot.r R/rare_stacked.r R/rarefy.r R/rbiom-deprecated.r R/rbiom-package.R R/rbiom_objects.r R/read_biom.r R/read_fasta.r R/read_tree.r R/s3_methods.r R/speed_ups.r R/stats_table.r R/stats_table_cat.r R/stats_table_num.r R/taxa_boxplot.r R/taxa_corrplot.r R/taxa_heatmap.r R/taxa_map.r R/taxa_stacked.r R/taxa_stats.r R/taxa_table.r R/tree_plot.r R/utils.r R/validate.r R/write_biom.r R/write_xlsx.r R/zzz.R README.Rmd README.md

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exec/rbiom_subset.r

inst/extdata/hmp50.bz2

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man/glimpse.rbiom.Rd man/hmp50.Rd man/mutate.Rd man/plot_heatmap.Rd man/pull.rbiom.Rd man/rare_corrplot.Rd man/rare_multiplot.Rd man/rare_stacked.Rd man/rarefy.Rd man/rarefy_cols.Rd man/rbiom-deprecated.Rd man/rbiom-package.Rd man/rbiom_objects.Rd man/read_fasta.Rd man/read_tree.Rd man/sample_sums.Rd man/slice.Rd man/speed.Rd man/subset.Rd man/taxa_boxplot.Rd man/taxa_corrplot.Rd man/taxa_heatmap.Rd man/taxa_map.Rd man/taxa_matrix.Rd man/taxa_stacked.Rd man/taxa_stats.Rd man/taxa_sums.Rd man/tree_subset.Rd man/write_biom.Rd

paper.bib

paper.md

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rbiom.txt

src/Makevars.win

src/RcppExports.cpp

src/par_beta_div.cpp

src/par_unifrac.cpp

src/rcpp_alpha_div.cpp

src/rcpp_rarefy.cpp

src/rcpp_treeIO.cpp

tests/testthat.R tests/testthat/Rplots.pdf tests/testthat/_snaps/accessors.md tests/testthat/_snaps/adiv_boxplot.md

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tests/testthat/inputs/biom.rds

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tests/testthat/outputs/subset_ex3.rds

tests/testthat/outputs/taxa_rollup.rds

tests/testthat/test-accessors.r tests/testthat/test-adiv_boxplot.r

vignettes/.gitignore

vignettes/articles/aes.Rmd vignettes/articles/bdiv_cmp.Rmd vignettes/articles/diversity.Rmd vignettes/articles/importing.Rmd vignettes/articles/plots.Rmd vignettes/articles/rbiom.Rmd vignettes/articles/scales.Rmd vignettes/articles/statistics.Rmd

cmmr/rbiom documentation built on Feb. 16, 2024, 3:34 a.m.

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cmmr/rbiom
Read/Write, Analyze, and Visualize 'BIOM' Data

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Read/Write, Analyze, and Visualize 'BIOM' Data

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