README.md

gintools

Tools used for analysis and interpretation of foriegn DNA integration elements, such as retroviruses, retroviral-based gene therapy vectors, retrotransposons, or DNA oligos incorporated into a host genome by a Non-Homologous End Joining pathway.

Functions contained in the gintools package can be separated into different catagories:

Install

To install gintools, simply run the following command within an R session:

devtools::install_github("https://github.com/cnobles/gintools.git")

# Or

devtools::install_github("cnobles/gintools")

Functions by catagory

Nucleotide sequence processing

Alignment interpretation

Analytics

Utilities

Dependencies

The gintools package depends on R 3.2 or higher and will Import the following packages during installation unless they are already present:

The following packages are suggested for increased utility:



cnobles/gintools documentation built on Aug. 22, 2019, 10:36 a.m.