FastaFilter: Filter fasta files

Description Usage Arguments Details Value Author(s) References

Description

Function to remove duplicate sequences.

Usage

1
FastaFilter(f.in, folder = F, prefix="pruned")

Arguments

f.in

If a single file is being processed then this is the filename including the relative path.

folder

if TRUE then all files in the current working directory will be processed if FALSE then a single file from f.in will be processed

prefix

A character string specifying the prefix to be added to the file names after filtering.

Details

Function removes duplicate sequences from the same taxon. Will keep only the longest file for each taxon. Can process a single file or all files in a folder.

Value

Saves a fasta formatted file that has been reduced to unique sequences.

Author(s)

Heath Blackmon

References

http://coleoguy.github.io/


coleoguy/evobir documentation built on June 13, 2019, 9:54 p.m.