generate_taxonomy_table: Generate the taxonomy table

View source: R/generate_taxonomy_table.R

generate_taxonomy_tableR Documentation

Generate the taxonomy table

Description

This code will generate the taxonomy table for all species or strains with available NCBI genomes. Each column is a taxonomic rank or indication of a strain; each row is a taxonomic classification for an unique species or strain.

Usage

generate_taxonomy_table()

Details

To use an NCBI key, add 'ENTREZ_KEY = <your key here>' to your global environment using 'Sys.setenv()'.

Value

A table of taxonomic relationships for all species or strains with NCBI genomes.

Examples

# Code not run
## Not run: 
generate_taxonomy_table()

## End(Not run)


compbiomed/MetaScope documentation built on Aug. 9, 2022, 10:41 a.m.