API for compbiomed/scuff
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)

Global functions
alignRsubread Man page Source code
alignRsubreadUnit Source code
bamExample Man page
barcodeExample Man page
checkCores Source code
countUMI Man page Source code
countUmiUnit Source code
demultiplex Man page Source code
demultiplexUnit Source code
getAlignmentFilePaths Source code
gtfReadDb Source code
gview Man page Source code
logMessages Source code
plotCounts Source code
plotFracProteinCodingGenes Source code
plotFracProteinCodingTranscripts Source code
plotGeneToGenomeFraction Source code
plotGeneToTotalFraction Source code
plotGenes Source code
plotGenesPerMillionReads Source code
plotGenomeReadsFraction Source code
plotMtCounts Source code
plotMtCountsFraction Source code
plotReadsMappedToGenes Source code
plotReadsMappedToGenome Source code
plotTotalReads Source code
propmappedWrapper Source code
qcplots Man page Source code
removeLastExtension Source code
rview Man page Source code
sceExample Man page
scruff Man page Source code
stripLeadingUnderscore Source code
themePublication Source code
toBam Source code
compbiomed/scuff documentation built on July 13, 2018, 3:28 p.m.