inst/scripts/getData_statistics.R
In compgenomr/compGenomRData: Data for Computational Genomics with R book
# get data explaratory data analysis statisticsChp
library(leukemiasEset)
mat=exprs(leukemiasEset)
mat=(limma::normalizeQuantiles(mat))
mat2=mat[order(matrixStats::rowSds(mat)/rowMeans(mat)),][1:1000,]
saveRDS(mat2,"leukemiaExpressionSubset.rds")
saveRDS(mat,"leukemiaExpression.rds")
mat=readRDS("leukemiaExpressionSubset.rds")
compgenomr/compGenomRData documentation built on Aug. 5, 2021, 5:29 p.m.
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# get data explaratory data analysis statisticsChp
library(leukemiasEset)
mat=exprs(leukemiasEset)
mat=(limma::normalizeQuantiles(mat))
mat2=mat[order(matrixStats::rowSds(mat)/rowMeans(mat)),][1:1000,]
saveRDS(mat2,"leukemiaExpressionSubset.rds")
saveRDS(mat,"leukemiaExpression.rds")
mat=readRDS("leukemiaExpressionSubset.rds")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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