cran-comments.md

In corybrunson/ggalluvial: Alluvial Plots in 'ggplot2'

Timing

Version 0.12.4 was just released in order to resolve a bug that arose with the upgrade to {dplyr} 1.1.0. Unfortunately, that fix simply shifted the bug to interoperation with {dplyr} <= 1.0.10. This quick patch resolves the bug for all versions. Discussion can be found under issues #107 https://github.com/corybrunson/ggalluvial/issues/107 and #108 https://github.com/corybrunson/ggalluvial/issues/108 on GitHub.

Test environments

• local OS X install, R 4.2.1
• devtools::check()
• devtools::check(env_vars = c('_R_CHECK_DEPENDS_ONLY_' = "true"))
• Win-Builder
• devtools::check_win_oldrelease()
• devtools::check_win_release()
• devtools::check_win_devel()
• R-hub
• rhub::check_for_cran()
• rhub::check_for_cran(platforms = "macos-highsierra-release-cran")

In response to a previous failed submission, {vdiffr} tests are now skipped on CRAN and when not installed, using testthat::skip_*().

R CMD check results

There were no ERRORs, WARNINGs, or NOTEs.

WinBuilder

There were no ERRORs or WARNINGs.

On one platform (x86_64-w64-mingw32 (64-bit); the old release), one NOTE flagged several last names in the DESCRIPTION as possibly misspelled words (these have been checked), while another NOTE flagged examples that took > 10s to run:

** running examples for arch 'i386' ... [39s] NOTE
Examples with CPU (user + system) or elapsed time > 10s
              user system elapsed
stat_alluvium 9.86   0.06   10.14
** running examples for arch 'x64' ... [42s] NOTE
Examples with CPU (user + system) or elapsed time > 10s
               user system elapsed
stat_alluvium 10.64   0.05   10.97

I still don't know why this is, as the number of examples outside \donttest sections in the documentation for each function is no larger than previous submissions.

Rhub

There were no WARNINGs.

On one platform (Windows Server 2022, R-devel, 64 bit), one NOTE read as follows:

* checking for detritus in the temp directory ... NOTE
Found the following files/directories:
  'lastMiKTeXException'

As documented, this note is probably due to a MiKTeX bug that can be ignored: https://github.com/r-hub/rhub/issues/503

Downstream dependencies

CRAN reports the following reverse depends:

• {iotarelr}

CRAN reports the following reverse imports:

• {bandle} (Bioconductor)
• {easyalluvial}
• {ethnobotanyR}
• {immunarch}
• {MutationalPatterns} (Bioconductor)
• {projectR} (Bioconductor)
• {scRepertoire} (Bioconductor)
• {standR} (Bioconductor)

CRAN reports the following reverse suggests:

• {ISAnalytics} (Bioconductor)
• {longmixr}
• {MicrobiotaProcess} (Bioconductor)
• {Platypus}
• {plotly}
• {SCpubr}
• {sigminer}

revdepcheck::revdep_check() on CRAN source code produced no ERRORs, WARNINGs, or NOTEs. Checks on GitHub/Bioconductor source code produced the ERROR with {projectR} reproduced here: https://github.com/genesofeve/projectR/issues/27#issuecomment-1415490762 The maintainer indicated on that issue that this is a problem with the development version of {projectR}, not with the dependency.

corybrunson/ggalluvial documentation built on July 27, 2023, 1:39 p.m.