Files in craddm/eegUtils

Utilities for Electroencephalographic (EEG) Analysis

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NEWS.md R/RcppExports.R R/ar-faster.R R/ar_for_ica.R R/artefact_rejection.R R/artefact_viewer.R R/baseline_correction.R R/channel_management.R R/check_items.R R/class_handling.R R/current_source_density.R R/data.R R/data_averaging.R R/data_combine.R R/data_epoching.R R/data_modifiers.R R/data_selection.R R/data_viewers.R R/deprecated.R R/df_converters.R R/dplyr-extensions.R R/eegUtils-package.R R/epoch_images.R R/epoch_queries.R R/erp_scalp.R R/event_codes.R R/fieldtrip_structures.R R/file_export.R R/file_io.R R/filtering.R R/frequency_analysis.R R/frequency_plotting.R R/get_scalpmap.R R/ggplot2-extensions.R R/glm_fitting.R R/import_erplab.R R/parse_hdf5.R R/plot_butterfly.R R/plot_difference.R R/plot_timecourse.R R/print_functions.R R/run_ICA.R R/signal_decomposition.R R/stat_classes.R R/summary_contour.R

R/sysdata.rda

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data-raw/GSN-HydroCel-128.sfp

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data-raw/biosemi64alpha.txt

data-raw/easycap-M1.txt

data-raw/easycap-M10.txt

data-raw/proc_elecs_internal.R

data-raw/standard_1005.elc

data-raw/standard_1020.elc

data-raw/standard_alphabetic.elc

data-raw/standard_postfixed.elc

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docs/reference/as.data.frame.eeg_lm.html

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docs/reference/create_grandavg.html

docs/reference/create_head.html

docs/reference/create_psd_plot.html

docs/reference/create_tc.html

docs/reference/cycle_calc.html

docs/reference/deg2rad.html

docs/reference/demo_epochs.html

docs/reference/demo_spatial.html

docs/reference/downsample_events.html

docs/reference/drop_points.html

docs/reference/eegUtils-package.html

docs/reference/eegUtils.html

docs/reference/eeg_FASTER.html

docs/reference/eeg_ICA.html

docs/reference/eeg_ar_thresh.html

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docs/reference/faster_cine.html

docs/reference/faster_epo_stat.html

docs/reference/faster_epochs.html

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docs/reference/fix_grpdelay.html

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docs/reference/get_lm.html

docs/reference/get_participant_id.html

docs/reference/get_scalpmap.html

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docs/reference/import_elp.html

docs/reference/import_erplab.html

docs/reference/import_ft.html

docs/reference/import_raw.html

docs/reference/import_set.html

docs/reference/import_txt.html

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docs/reference/interp_chans.html

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docs/reference/is.eeg_ICA.html

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docs/reference/is.eeg_epochs.html

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docs/reference/plot_timecourse.html

docs/reference/pol_to_sph.html

docs/reference/print.eeg_ICA.html

docs/reference/print.eeg_data.html

docs/reference/print.eeg_epochs.html

docs/reference/print.eeg_evoked.html

docs/reference/print.eeg_group.html

docs/reference/print.eeg_lm.html

docs/reference/print.eeg_stats.html

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docs/reference/proc_events.html

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docs/reference/reexports.html

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docs/reference/select_times.html

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docs/reference/sobi_ICA.html

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docs/reference/sph_to_topo.html

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docs/reference/split_vec.html

docs/reference/stat_scalpcontours.html

docs/reference/stat_scalpmap.html

docs/reference/stereo_norm.html

docs/reference/summary.eeg_data.html

docs/reference/tag_epochs.html

docs/reference/tag_events.html

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docs/reference/tf_morlet.html

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docs/reference/update_r.html

docs/reference/validate_channels.html

docs/reference/validate_eeg_data.html

docs/reference/view_artefacts.html

docs/reference/view_ica.html

docs/reference/wavelet_norm.html

docs/reference/welch_fft.html

docs/reference/zero_vec.html

docs/sitemap.xml

eegUtils.Rproj

man/StatScalpContours.Rd man/StatScalpmap.Rd man/apply_ica.Rd man/ar_FASTER.Rd man/ar_acf.Rd man/ar_chanfoc.Rd man/ar_eogcor.Rd man/ar_eogreg.Rd man/ar_thresh.Rd man/ar_trialfoc.Rd man/arrange_chans.Rd man/as.data.frame.eeg_ICA.Rd man/as.data.frame.eeg_data.Rd man/as.data.frame.eeg_epochs.Rd man/as.data.frame.eeg_evoked.Rd man/as.data.frame.eeg_lm.Rd man/as.data.frame.eeg_stats.Rd man/as.data.frame.eeg_tfr.Rd man/average_tf.Rd man/browse_data.Rd man/bva_elecs.Rd man/calc_max_elec.Rd man/cart_to_spherical.Rd man/channel_names.Rd man/channel_stats.Rd man/channels.Rd man/check_ci_str.Rd man/check_classes.Rd man/check_epochs.Rd man/check_q.Rd man/check_timings.Rd man/circ_mean.Rd man/circ_rad_fun.Rd man/compute_ITC.Rd man/compute_csd.Rd man/compute_g.Rd man/compute_h.Rd man/compute_psd.Rd man/compute_tfr.Rd man/conv_to_mat.Rd man/convert_tfr.Rd man/convert_to_csd.Rd man/cov_epochs.Rd man/create_erpimage.Rd man/create_psd_plot.Rd man/create_tc.Rd man/cycle_calc.Rd man/deg2rad.Rd man/demo_epochs.Rd man/demo_spatial.Rd man/downsample_events.Rd man/drop_points.Rd man/eegUtils-package.Rd man/eeg_ICA.Rd man/eeg_average.Rd man/eeg_combine.Rd man/eeg_data.Rd man/eeg_decompose.Rd man/eeg_downsample.Rd man/eeg_epochs.Rd man/eeg_evoked.Rd man/eeg_filter.Rd man/eeg_psd.Rd man/eeg_reference.Rd man/eeg_stats.Rd man/eeg_tfr.Rd man/electrode_locations.Rd man/epoch_data.Rd man/epoch_data.default.Rd man/epoch_stats.Rd man/epochs.Rd man/erp_image.Rd man/erp_raster.Rd man/erp_scalp.Rd man/est_filt_order.Rd man/est_tbw.Rd man/events.Rd man/export_bva.Rd man/faster_chans.Rd man/faster_cine.Rd man/faster_epo_stat.Rd man/faster_epochs.Rd man/fft_n.Rd

man/figures/do_filt-1.png

man/figures/do_filt-2.png

man/figures/lifecycle-archived.svg

man/figures/lifecycle-defunct.svg

man/figures/lifecycle-deprecated.svg

man/figures/lifecycle-experimental.svg

man/figures/lifecycle-maturing.svg

man/figures/lifecycle-questioning.svg

man/figures/lifecycle-stable.svg

man/figures/lifecycle-superseded.svg

man/figures/unnamed-chunk-10-1.png

man/figures/unnamed-chunk-3-1.png

man/figures/unnamed-chunk-3-2.png

man/figures/unnamed-chunk-3-3.png

man/figures/unnamed-chunk-3-4.png

man/figures/unnamed-chunk-4-1.png

man/figures/unnamed-chunk-5-1.png

man/figures/unnamed-chunk-6-1.png

man/figures/unnamed-chunk-7-1.png

man/figures/unnamed-chunk-8-1.png

man/figures/unnamed-chunk-9-1.png

man/filt_kernel.Rd man/filter_coefs.Rd man/find_times.Rd man/fit_glm.Rd man/fix_grpdelay.Rd man/flip_x.Rd man/gauss_filter.Rd man/geom_topo.Rd man/get_epoch_baselines.Rd man/get_lm.Rd man/get_participant_id.Rd man/get_scalpmap.Rd man/iir_filt.Rd man/import_chans.Rd man/import_cnt.Rd man/import_elc.Rd man/import_elp.Rd man/import_erplab.Rd man/import_ft.Rd man/import_raw.Rd man/import_set.Rd man/import_txt.Rd man/import_vhdr.Rd man/interactive_scalp.Rd man/interp_chans.Rd man/interp_elecs.Rd man/is.eeg_ICA.Rd man/is.eeg_data.Rd man/is.eeg_epochs.Rd man/is.eeg_evoked.Rd man/is.eeg_group.Rd man/is.eeg_stats.Rd man/is.eeg_tfr.Rd man/kurtosis.Rd man/label_check.Rd man/list_epochs.Rd man/list_events.Rd man/make_head.Rd man/make_l_ear.Rd man/make_r_ear.Rd man/montage_check.Rd man/morlet.Rd man/morlet_res.Rd man/norm_sphere.Rd man/ortho_norm.Rd man/pad.Rd man/parse_args.Rd man/parse_chaninfo.Rd man/parse_filt_freqs.Rd man/parse_for_bf.Rd man/parse_for_tc.Rd man/parse_vhdr_chans.Rd man/plot_butterfly.Rd man/plot_difference.Rd man/plot_electrodes.Rd man/plot_psd.Rd man/plot_tfr.Rd man/plot_timecourse.Rd man/print.eeg_ICA.Rd man/print.eeg_data.Rd man/print.eeg_epochs.Rd man/print.eeg_evoked.Rd man/print.eeg_group.Rd man/print.eeg_lm.Rd man/print.eeg_stats.Rd man/print.eeg_tfr.Rd man/proc_events.Rd man/project_elecs.Rd man/quick_hurst.Rd man/rad2deg.Rd man/read_dat.Rd man/read_vmrk.Rd man/rearrange_tfr.Rd man/reexports.Rd man/remove_edges.Rd man/rm_baseline.Rd man/rob_se.Rd man/rotate_angle.Rd man/run_ICA.Rd man/run_SSD.Rd man/run_fir.Rd man/run_iir.Rd man/samples.Rd man/select_elecs.Rd man/select_epochs.Rd man/select_freqs.Rd man/select_times.Rd man/select_window.Rd man/set_palette.Rd man/sobi_ICA.Rd man/spec_inv.Rd man/sph_to_cart.Rd man/spheric_spline.Rd man/split_vec.Rd man/stat_scalpcontours.Rd man/stat_scalpmap.Rd man/stereo_norm.Rd man/tag_epochs.Rd man/tag_events.Rd man/tf_hanning.Rd man/tf_morlet.Rd man/topo_norm.Rd man/topoplot.Rd man/unpad.Rd man/update_r.Rd man/validate_channels.Rd man/validate_eeg_data.Rd man/view_artefacts.Rd man/view_ica.Rd man/wavelet_norm.Rd man/welch_fft.Rd man/zero_vec.Rd

src/.gitignore

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/base_mat.cpp

src/ica_test.cpp

tests/testthat.R

tests/testthat/150_250_epochs.rds

tests/testthat/EEG_epochs.rda

tests/testthat/EEGdat.rda

tests/testthat/Newtest17-256.bdf

tests/testthat/Pz_bl_corrected.rds

tests/testthat/Pz_bl_epochs.rds

tests/testthat/Pz_epochs.rds

tests/testthat/Pz_single_epoch.rds

tests/testthat/_snaps/ICA/fastica-psd.svg

tests/testthat/_snaps/ICA/fastica-timecourse.svg

tests/testthat/_snaps/ICA/reconstruct-all.svg

tests/testthat/_snaps/ICA/removed-one-component.svg

tests/testthat/_snaps/ICA/timecourse-over-one-component.svg

tests/testthat/_snaps/ICA/topographical-plot-for-fastica.svg

tests/testthat/_snaps/ICA/topographical-plot-for-fica.svg

tests/testthat/_snaps/ICA/topographical-plot-for-sobi.svg

tests/testthat/_snaps/ICA/topoplot-multiple-comps.svg

tests/testthat/_snaps/epoch_images/erp-image-a29-from-demo-epochs.svg

tests/testthat/_snaps/epoch_images/erp-raster-with-facets.svg

tests/testthat/_snaps/epoch_images/erp-raster-without-anat-order.svg

tests/testthat/_snaps/frequency_analysis/hanning-tfr-log-spaced-plot.svg

tests/testthat/_snaps/frequency_analysis/hanning-tfr-plot.svg

tests/testthat/_snaps/frequency_plotting/absolute.svg

tests/testthat/_snaps/frequency_plotting/db.svg

tests/testthat/_snaps/frequency_plotting/pc.svg

tests/testthat/_snaps/frequency_plotting/power-spectrum-for-demo-epochs.svg

tests/testthat/_snaps/frequency_plotting/ratio.svg

tests/testthat/_snaps/frequency_plotting/tfa-plot-for-demo-epochs-fourier.svg

tests/testthat/_snaps/frequency_plotting/tfa-plot-for-demo-epochs.svg

tests/testthat/_snaps/frequency_plotting/tfa-plot-for-log-spaced.svg

tests/testthat/_snaps/frequency_plotting/tfa-plot-unaveraged.svg

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tests/testthat/_snaps/ggplot/geom-topo-build.svg

tests/testthat/_snaps/ggplot/geom-topo-head-test.svg

tests/testthat/_snaps/ggplot/geom-topo-labels.svg

tests/testthat/_snaps/ggplot/geom-topo-name.svg

tests/testthat/_snaps/ggplot/geom-topo-test.svg

tests/testthat/_snaps/plotting_funs/a29-baseline-corr-epochs.svg

tests/testthat/_snaps/plotting_funs/a29-only-epochs.svg

tests/testthat/_snaps/plotting_funs/butterfly-epochs-baseline.svg

tests/testthat/_snaps/plotting_funs/butterfly-epochs.svg

tests/testthat/_snaps/plotting_funs/butterfly-evoked.svg

tests/testthat/_snaps/plotting_funs/epochs-plot.svg

tests/testthat/_snaps/plotting_funs/erp-scalp-plot-from-demo-spatial.svg

tests/testthat/_snaps/plotting_funs/erp-scalp-plot-with-colour.svg

tests/testthat/_snaps/plotting_funs/gam-topo.svg

tests/testthat/_snaps/plotting_funs/head-limit.svg

tests/testthat/_snaps/plotting_funs/plot-timecourse-of-component.svg

tests/testthat/_snaps/plotting_funs/plot-timecourse-of-evoked.svg

tests/testthat/_snaps/plotting_funs/plot-timecourse-of-tfr-in-db.svg

tests/testthat/_snaps/plotting_funs/plot-timecourse-of-tfr.svg

tests/testthat/_snaps/plotting_funs/topoplot-of-epochs-150-200ms.svg

tests/testthat/_snaps/plotting_funs/topoplot-of-epochs.svg

tests/testthat/_snaps/signal_decomposition/topographical-plot-for-ssd.svg

tests/testthat/avg_all_elecs.rds

tests/testthat/avg_epochs_elecs.rds

tests/testthat/butterfly_epochs.rds

tests/testthat/chan_stats.Rdata

tests/testthat/eeglab_hdf5.set

tests/testthat/epo_stats.Rdata

tests/testthat/faster_t.Rdata

tests/testthat/gam_topo.rds

tests/testthat/psd_output.Rdata

tests/testthat/small_test_hdf5.set

tests/testthat/standard_1005.elc

tests/testthat/test-ICA.R tests/testthat/test-dply.R tests/testthat/test-eeg_combine.R tests/testthat/test-epoch_images.R tests/testthat/test-ggplot.R tests/testthat/test-glm.R tests/testthat/test-import.R tests/testthat/test-parse_hdf5.R tests/testthat/test-plotting_funs.R tests/testthat/test-signal_decomposition.R tests/testthat/test-utils.R tests/testthat/test_artefact_rejection.R tests/testthat/test_baseline_correction.R tests/testthat/test_channel_management.R tests/testthat/test_data_modifiers.R tests/testthat/test_downsample.R tests/testthat/test_filtering.R tests/testthat/test_frequency_analysis.R tests/testthat/test_frequency_plotting.R

tests/testthat/test_glm.Rdata

tests/testthat/test_glm_bl.Rdata

tests/testthat/test_selections.R

tests/testthat/thresh_test.Rdata

tests/testthat/topo_epochs.rds

vignettes/.gitignore

vignettes/data_structures.Rmd vignettes/eegUtils.Rmd vignettes/epoch-handling.Rmd vignettes/linear_modelling/linear_modelling.Rmd vignettes/time-frequency-analysis.Rmd vignettes/topoplot/topoplot.Rmd

craddm/eegUtils documentation built on March 24, 2022, 9:17 a.m.