tests/testthat/setup-mimic_live_app.R

In csoneson/iSEEu: iSEE Universe

setup_script <- system.file(package = "iSEE", "tests", "testthat", "setup_mimic_live_app.R")
# the script will be available in iSEE version 2.1.22
if (file.exists(setup_script)) {
    source(setup_script)
} else {
    mimic_live_app <- function(se, all_memory) {
    se <- iSEE:::.prepare_SE(se, ExperimentColorMap(), all_memory)
    init_out <- iSEE:::.setup_initial_state(se, all_memory)
    res_out <- iSEE:::.define_reservoir(se, list(), init_out$memory, init_out$counter)
    pObjects <- iSEE:::.create_persistent_objects(init_out$memory, res_out$reservoir, res_out$counter)

    rObjects <- list()
    ordering <- names(igraph::topo_sort(pObjects$selection_links, mode="out"))
    for (o in ordering) {
        stuff <- iSEE::.retrieveOutput(o, se, pObjects, rObjects)
        pObjects$varname[[o]] <- if (is(all_memory[[o]], "Table")) "tab" else "plot.data"
    }

    pObjects
}
}