API for ctmm-initiative/ctmm
Continuous-Time Movement Modeling
| Global functions | |
|---|---|
| %#% | Man page |
| .CI | Source code |
| .onLoad | Source code |
| AICc | Source code |
| AICc.ctmm | Source code |
| AICc.list | Source code |
| Adj | Source code |
| Assign | Source code |
| BesselK | Source code |
| BesselSolver | Source code |
| BhattacharyyaD | Source code |
| CI.UD | Source code |
| COV.covm | Source code |
| DD.IG.ratio | Source code |
| DOF.area | Source code |
| DOF.mean | Source code |
| DOF.speed | Source code |
| DOF.var | Source code |
| DOF.wishart | Source code |
| DOP.match | Source code |
| Diff.OUF.fn | Source code |
| Diff.OUO.fn | Source code |
| DiffGrid | Source code |
| EncounterD | Source code |
| EuclideanD | Source code |
| Exp | Man page Source code |
| FFT | Source code |
| FFTW | Source code |
| Gauss | Source code |
| Gauss1 | Source code |
| Gauss3 | Source code |
| Gram.Schmidt | Source code |
| HSCV | Source code |
| He | Source code |
| IFFT | Source code |
| IG.ci | Source code |
| J.par.sigma | Source code |
| J.sigma.par | Source code |
| J.zero | Source code |
| LOOCV | Source code |
| Langevin | Source code |
| Log | Man page Source code |
| MahalanobisD | Source code |
| Move2CSV | Source code |
| NewtonCotes | Source code |
| PDclamp | Source code |
| PDfunc | Source code |
| PDlogdet | Source code |
| PDsolve | Source code |
| PHYsolve | Source code |
| PQP.solve | Source code |
| QuadSolve | Source code |
| QuadTest | Source code |
| R.extract | Source code |
| R.grid | Source code |
| R.prepare | Source code |
| R.suit | Source code |
| RateD | Source code |
| SpatialPoints.telemetry | Man page Source code |
| SpatialPointsDataFrame.telemetry | Man page Source code |
| SpatialPolygonsDataFrame.UD | Man page Source code |
| SpatialPolygonsDataFrame.telemetry | Man page Source code |
| TanhSolver | Source code |
| UNFINISHED.as.telemetry.sf | Source code |
| WolfeTest | Source code |
| `%#%` | Source code |
| `[.periodogram` | Source code |
| `[.telemetry` | Source code |
| `[.variogram` | Source code |
| abs_bivar | Source code |
| abs_data | Source code |
| agde | Man page Source code |
| akde | Man page Source code |
| akde.bias | Source code |
| akde.list | Man page |
| akde.telemetry | Man page |
| alpha.ctmm | Source code |
| annotate | Man page Source code |
| anonymize | Source code |
| anti.alias | Source code |
| area.covm | Source code |
| arrayify | Source code |
| as.matrix.Extent | Source code |
| as.sf | Man page Source code |
| as.telemetry | Man page Source code |
| as.telemetry.Move | Man page Source code |
| as.telemetry.MoveStack | Source code |
| as.telemetry.character | Man page Source code |
| as.telemetry.data.frame | Man page Source code |
| asPOSIXct | Source code |
| assign_speeds | Source code |
| axes2var | Source code |
| bandwidth | Man page Source code |
| bandwidth.pop | Source code |
| beta.ci | Source code |
| bint | Source code |
| box.search | Source code |
| buffalo | Man page |
| canonical.name | Source code |
| capitalize | Source code |
| cartesian2ellipsoid | Source code |
| cde | Man page Source code |
| cde.ctmm | Source code |
| cdf2pmf | Source code |
| change.point.complexify | Source code |
| change.point.energy | Source code |
| change.point.guess | Source code |
| change.point.iid | Source code |
| change.point.init | Source code |
| change.point.is.stationary | Source code |
| change.point.mean | Source code |
| change.point.name | Source code |
| change.point.scale | Source code |
| change.point.set | Source code |
| change.point.simplify | Source code |
| change.point.speed | Source code |
| change.point.summary | Source code |
| change.point.svf | Source code |
| change.point.velocity | Source code |
| check.class | Source code |
| check.projections | Source code |
| chi.bias | Source code |
| chi.dof | Source code |
| chi.var | Source code |
| chisq.IG.ci | Source code |
| chisq.ci | Source code |
| chisq.dof | Source code |
| chisq.hdr | Source code |
| ci.tau | Source code |
| circadian | Source code |
| clamp | Source code |
| classnames | Source code |
| clean.parameters | Source code |
| cleave | Man page Source code |
| cluster | Man page Source code |
| cluster.area | Source code |
| cluster.chisq | Source code |
| coati | Man page |
| color | Man page Source code |
| color.individual | Source code |
| combine | Source code |
| compass | Man page Source code |
| complexify.ctmm | Source code |
| composite | Source code |
| conditionNumber | Source code |
| confint.ctmm | Source code |
| continuity | Source code |
| contourLines | Source code |
| convex | Source code |
| copy | Source code |
| copy.parameters | Source code |
| correlogram | Man page Source code |
| corridor | Source code |
| cosine.timelink.complexify | Source code |
| cosine.timelink.fn | Source code |
| cosine.timelink.name | Source code |
| cosine.timelink.summary | Source code |
| cov.geo2xy | Source code |
| cov.loglike | Source code |
| cov.xy2geo | Source code |
| covm | Source code |
| cross.terms | Source code |
| ctmm | Man page Source code |
| ctmm-FAQ | Man page |
| ctmm-faq | Man page |
| ctmm-package | Man page |
| ctmm.apply | Source code |
| ctmm.boot | Man page Source code |
| ctmm.circulate | Source code |
| ctmm.commute | Source code |
| ctmm.ctmm | Source code |
| ctmm.fit | Man page Source code |
| ctmm.guess | Man page Source code |
| ctmm.iterate | Source code |
| ctmm.loglike | Man page Source code |
| ctmm.prepare | Source code |
| ctmm.reduce | Source code |
| ctmm.repair | Source code |
| ctmm.select | Man page Source code |
| ctpm.loglike | Source code |
| currence | Source code |
| cv.like | Source code |
| debias.area | Source code |
| debias.volume | Source code |
| det.covm | Source code |
| det.numeric | Source code |
| det2 | Source code |
| detectCores | Source code |
| determinant.numeric | Source code |
| dexp1 | Source code |
| dexp2 | Source code |
| difference | Man page Source code |
| diffusion | Source code |
| dimfig | Man page Source code |
| distance | Man page Source code |
| distanceMLE | Source code |
| distances | Man page Source code |
| drift.assign | Source code |
| drift.complexify | Source code |
| drift.energy | Source code |
| drift.fn | Source code |
| drift.init | Source code |
| drift.is.finite | Source code |
| drift.is.stationary | Source code |
| drift.mean | Source code |
| drift.name | Source code |
| drift.pars | Source code |
| drift.scale | Source code |
| drift.shift | Source code |
| drift.simplify | Source code |
| drift.speed | Source code |
| drift.summary | Source code |
| drift.svf | Source code |
| drift.velocity | Source code |
| dt.plot | Man page Source code |
| eigen.extrapolate | Source code |
| eigenvalues.covm | Source code |
| ellipsograph | Source code |
| ellipsoid2cartesian | Source code |
| empty.env | Source code |
| emulate | Man page Source code |
| emulate.ctmm | Man page Source code |
| emulate.telemetry | Man page Source code |
| encounter | Man page Source code |
| exp_covm | Source code |
| exp_ctmm | Source code |
| exp_log | Source code |
| expand.factors | Source code |
| export | Man page |
| ext.mat | Source code |
| extent | Man page |
| extent,UD-method | Man page |
| extent,ctmm-method | Man page |
| extent,data.frame-method | Man page |
| extent,list-method | Man page |
| extent,matrix-method | Man page |
| extent,telemetry-method | Man page |
| extent,variogram-method | Man page |
| extent.UD | Source code |
| extent.ctmm | Source code |
| extent.list | Source code |
| extent.matrix | Source code |
| extent.telemetry | Source code |
| extent.variogram | Source code |
| extract | Source code |
| fbind | Source code |
| fill.data | Source code |
| first | Source code |
| fixInf | Source code |
| fixNaN | Source code |
| flatten.cov.mu | Source code |
| fn.covm | Source code |
| format_grid | Source code |
| format_par | Source code |
| format_projection | Source code |
| fourier.timelink.complexify | Source code |
| fourier.timelink.fn | Source code |
| fourier.timelink.name | Source code |
| fourier.timelink.simplify | Source code |
| fourier.timelink.summary | Source code |
| funnel | Man page Source code |
| gauss.comp | Source code |
| gazelle | Man page |
| gcd | Source code |
| gcd.vec | Source code |
| genD | Source code |
| genD.mcDeriv | Source code |
| generate.units | Source code |
| get.IC | Source code |
| get.MSPE | Source code |
| get.UERE.DOF | Source code |
| get.class | Source code |
| get.class.mat | Source code |
| get.dop.types | Source code |
| get.error | Source code |
| get.link | Source code |
| get.loglike | Source code |
| get.mle | Source code |
| get.offset | Source code |
| get.parameters | Source code |
| get.states | Source code Source code |
| get.sundial | Source code |
| get.taus | Source code |
| get.telemetry | Source code |
| getMethod | Source code |
| glue | Source code |
| grad.white | Source code |
| grid.comp | Source code |
| grid.init | Source code |
| grid.intersection | Source code |
| grid.union | Source code |
| gridder | Source code |
| head | Man page |
| head.telemetry | Man page Source code |
| homerange | Man page Source code |
| ic.ctmm | Source code |
| id.parameters | Source code |
| idchisq | Source code |
| import.variable | Source code |
| inft | Source code |
| inside | Source code |
| intensity | Man page Source code |
| ipsigamma | Source code |
| is.bad | Source code |
| is.calibrated | Source code |
| is.consistent | Source code |
| is.consistent.pair | Source code |
| is.good | Source code |
| is.grid.complete | Source code |
| is.installed | Source code |
| is.stationary | Source code |
| isotrope | Source code |
| isqrtm | Source code |
| itrigamma | Source code |
| jaguar | Man page |
| kalman | Source code |
| kde | Source code |
| kde.grid | Source code |
| lKK | Source code |
| lag.DOF | Source code |
| langevin | Source code |
| lasso | Man page Source code |
| last | Source code |
| lbind | Source code |
| legendre | Source code |
| line.boxer | Source code |
| linktime | Source code |
| listify | Source code |
| log.F.CI | Source code |
| log.list | Source code |
| log_UD | Source code |
| log_area | Source code |
| log_chi2_bias | Source code |
| log_covm | Source code |
| log_ctmm | Source code |
| log_ctmms | Source code |
| log_speed | Source code |
| loglike.chisq | Source code |
| lognorm.ci | Source code |
| mag | Man page Source code |
| mag.telemetry | Man page Source code |
| malpha | Source code |
| marquee | Man page Source code |
| mat.min | Source code |
| match.arg | Source code |
| max_periodogram | Source code |
| mc.min | Source code |
| mc.optim | Source code |
| mean.UD | Man page Source code |
| mean.ctmm | Man page Source code |
| mean.features | Source code |
| mean.list | Source code |
| mean.mu | Source code |
| mean.variogram | Man page Source code |
| mean_info | Source code |
| mean_pop | Source code |
| median | Man page |
| median.list | Source code |
| median.longitude | Source code |
| median.telemetry | Man page Source code |
| median_longlat | Source code |
| merge.class | Source code |
| mesh3d.UD | Source code |
| meta | Man page Source code |
| meta.chisq | Source code |
| meta.normal | Source code |
| meta.uni | Source code |
| mid | Source code |
| midpoint | Man page Source code |
| min.ctmm | Source code |
| min.extent | Source code |
| mint | Source code |
| missing.class | Source code |
| mlog_ctmms | Source code |
| modes.UD | Source code |
| modes.ctmm | Source code |
| modes.numeric | Source code |
| mpad | Source code |
| mpow.covm | Source code |
| mpsigamma | Source code |
| mtmean | Source code |
| na.replace | Source code |
| name.ctmm | Source code |
| name.list | Source code |
| nant | Source code |
| new.plot | Source code |
| norm.ci | Source code |
| northing | Source code |
| npr | Man page Source code |
| nsv | Source code |
| occurrence | Man page Source code |
| optimizer | Man page Source code |
| outer | Source code |
| outlie | Man page Source code |
| outlier | Man page |
| overlap | Man page Source code |
| overlap.UD | Source code |
| overlap.ctmm | Man page Man page Man page Source code |
| overlap.telemetry | Man page Man page Man page |
| pad | Source code |
| pars | Source code |
| pars_covm | Source code |
| pars_tauv | Source code |
| pelican | Man page |
| periodic.assign | Source code |
| periodic.complexify | Source code |
| periodic.energy | Source code |
| periodic.init | Source code |
| periodic.is.finite | Source code |
| periodic.is.stationary | Source code |
| periodic.mean | Source code |
| periodic.name | Source code |
| periodic.omega | Source code |
| periodic.pars | Source code |
| periodic.scale | Source code |
| periodic.simplify | Source code |
| periodic.speed | Source code |
| periodic.stuff | Source code |
| periodic.summary | Source code |
| periodic.svf | Source code |
| periodic.variances | Source code |
| periodic.velocity | Source code |
| periodogram | Man page Source code |
| periodogram.fast | Source code |
| periodogram.slow | Source code |
| pfbinom | Source code |
| pkde | Man page Source code |
| plapply | Source code |
| plot | Man page |
| plot.UD | Source code |
| plot.ctmm | Source code |
| plot.list | Source code |
| plot.nsv | Source code |
| plot.outlie | Man page Source code |
| plot.periodogram | Man page Source code |
| plot.telemetry | Man page Source code |
| plot.variogram | Man page Source code |
| plot3d | Source code |
| plot_R | Source code |
| plot_SP | Source code |
| plot_ctmm | Source code |
| plot_df | Source code |
| plot_kde | Source code |
| plot_svf | Source code |
| pmf2cdf | Source code |
| pnorm1 | Source code |
| pnorm2 | Source code |
| pnorm3 | Source code |
| predict | Man page |
| predict.ctmm | Man page Source code |
| predict.telemetry | Man page Source code |
| pregridder | Source code |
| prepare.H | Source code |
| prepend | Source code |
| profiled.var | Source code |
| project | Source code |
| projection | Man page |
| projection,NULL-method | Man page |
| projection,UD-method | Man page |
| projection,ctmm-method | Man page |
| projection,list-method | Man page |
| projection,telemetry-method | Man page |
| projection.NULL | Source code |
| projection.list | Source code |
| projection.telemetry | Source code |
| projection<-,list-method | Man page |
| projection<-,telemetry-method | Man page |
| proximity | Man page Source code |
| pseudonymize | Source code |
| pull | Source code |
| pull.column | Source code |
| pwstationary.is.stationary | Source code |
| pwstationary.mean | Source code |
| pwstationary.scale | Source code |
| qfbinom | Source code |
| qmvnorm | Source code |
| quad2lin | Source code |
| quant | Source code |
| quantile.longitude | Source code |
| rand.speed | Source code |
| rank1update | Source code |
| raster,UD-method | Man page |
| raster.UD | Source code |
| rcov | Source code |
| rename | Source code |
| rename.matrix | Source code |
| residuals | Man page |
| residuals.calibration | Source code |
| residuals.ctmm | Man page Source code |
| residuals.telemetry | Man page Source code |
| resolveCores | Source code |
| revisitation | Man page Source code |
| ridges | Source code |
| ridges.UD | Source code |
| ridges2.UD | Source code |
| riffle | Source code |
| rm.incomplete | Source code |
| rm.name | Source code |
| rotate | Source code |
| rotate.covm | Source code |
| rotate.mat | Source code |
| rotate.north | Source code |
| rotate.vec | Source code |
| rotates | Source code |
| rotates.mat | Source code |
| rotates.vec | Source code |
| rpad | Source code |
| rsf.fit | Man page Source code |
| rsf.loglike | Source code |
| rsf.select | Man page Source code |
| same.grids | Source code |
| scale.covm | Source code |
| sdm.UD | Source code |
| sdm.fit | Man page Source code |
| sdm.integrate | Man page Source code |
| sdm.select | Man page Source code |
| selector | Source code |
| series | Source code |
| set.name | Source code |
| set.parameters | Source code |
| set.telemetry | Source code |
| shrink.chisq | Source code |
| sigfig | Man page Source code |
| sigma.COV | Source code |
| sigma.apply | Source code |
| sigma.construct | Source code |
| sigma.destruct | Source code |
| simplify.color | Source code |
| simplify.ctmm | Source code |
| simplify.formula | Source code |
| simulate | Man page |
| simulate.ctmm | Man page Source code |
| simulate.telemetry | Man page Source code |
| smoother | Source code |
| soft.clamp | Source code |
| solve_covm | Source code |
| sort.ctmm | Source code |
| speed | Man page Source code |
| speed.ctmm | Man page Source code |
| speed.telemetry | Man page Source code |
| speedMLE | Source code |
| speed_deterministic | Source code |
| speed_rand | Source code |
| speed_variance | Source code |
| speeds | Man page Source code |
| speeds.ctmm | Man page Source code |
| speeds.telemetry | Man page Source code |
| speeds_fast | Source code |
| speeds_slow | Source code |
| spline.timelink.clean | Source code |
| spline.timelink.complexify | Source code |
| spline.timelink.fn | Source code |
| spline.timelink.name | Source code |
| spline.timelink.parinfo | Source code |
| spline.timelink.simplify | Source code |
| spline.timelink.summary | Source code |
| sqrtm | Source code |
| sqrtm.covm | Source code |
| squeezable.covm | Source code |
| squeeze | Source code |
| squeeze.covm | Source code |
| squeeze.mat | Source code |
| stationary.assign | Source code |
| stationary.complexify | Source code |
| stationary.energy | Source code |
| stationary.init | Source code |
| stationary.is.finite | Source code |
| stationary.is.stationary | Source code |
| stationary.mean | Source code |
| stationary.name | Source code |
| stationary.pars | Source code |
| stationary.scale | Source code |
| stationary.shift | Source code |
| stationary.simplify | Source code |
| stationary.speed | Source code |
| stationary.summary | Source code |
| stationary.svf | Source code |
| stationary.velocity | Source code |
| str.UERE | Source code |
| str.covm | Source code |
| str.ctmm | Source code |
| str.custom | Source code |
| subset.periodogram | Source code |
| subset.telemetry | Source code |
| subset.variogram | Source code |
| suitability | Man page Source code |
| summary.UD | Man page Source code |
| summary.UERE | Man page Source code |
| summary.UERE.list | Source code |
| summary.ctmm | Man page Source code |
| summary.ctmm.list | Source code |
| summary.ctmm.single | Source code |
| summary.list | Source code |
| summary.meta | Source code |
| summary.meta.list | Source code |
| summary.meta.single | Source code |
| summary.telemetry | Man page Source code |
| summary_UD_format | Source code |
| svf.func | Source code |
| svf.test | Source code |
| switch.timelink.clean | Source code |
| switch.timelink.complexify | Source code |
| switch.timelink.fn | Source code |
| switch.timelink.name | Source code |
| switch.timelink.parinfo | Source code |
| switch.timelink.rate | Source code |
| switch.timelink.simplify | Source code |
| switch.timelink.summary | Source code |
| tail | Man page |
| tail.telemetry | Man page Source code |
| tbind | Man page Source code |
| telemetry.clean | Source code |
| telemetry.mins | Source code |
| temp_unzip | Source code |
| time_res | Source code |
| timelink.clean | Source code |
| timelink.complexify | Source code |
| timelink.fn | Source code |
| timelink.name | Source code |
| timelink.parinfo | Source code |
| timelink.rate | Source code |
| timelink.simplify | Source code |
| timelink.summary | Source code |
| tint | Source code |
| tnorm.hdr | Source code |
| tr | Source code |
| transition | Man page Source code |
| try.assign.uere | Source code |
| ts.plot | Source code |
| turtle | Man page |
| ubind | Source code |
| uere | Man page Source code |
| uere.fit | Man page Source code |
| uere.null | Source code |
| uere.type | Source code |
| uere<- | Man page |
| uniform.shift | Source code |
| unit | Source code |
| unit.UD | Source code |
| unit.ctmm | Source code |
| unit.par | Source code |
| unit.telemetry | Source code |
| unit.variogram | Source code |
| uspline.complexify | Source code |
| uspline.init | Source code |
| uspline.is.stationary | Source code |
| uspline.mean | Source code |
| uspline.name | Source code |
| uspline.scale | Source code |
| uspline.speed | Source code |
| uspline.stuff | Source code |
| ustring | Source code |
| validate.grid | Source code |
| validate.projection | Source code |
| var.covm | Source code |
| variogram | Man page Source code |
| variogram.ci | Source code |
| variogram.dt | Source code |
| variogram.fast | Source code |
| variogram.fit | Man page Source code |
| variogram.fit.backend | Source code |
| variogram.guess | Source code |
| variogram.slow | Source code |
| video | Man page Source code |
| vint | Source code |
| wolf | Man page |
| writeRaster,UD,character-method | Man page |
| writeRaster.UD | Source code |
| writeVector | Man page |
| writeVector,UD,character-method | Man page |
| writeVector,UD,missing-method | Man page |
| writeVector,list,character-method | Man page |
| writeVector,list,missing-method | Man page |
| writeVector,telemetry,character-method | Man page |
| writeVector,telemetry,missing-method | Man page |
| writeVector.UD | Source code |
| writeVector.list | Source code |
| writeVector.telemetry | Source code |
| zero.energy | Source code |
| zero.mean | Source code |
| zero.name | Source code |
| zoom,UD-method | Man page |
| zoom,list-method | Man page |
| zoom,telemetry-method | Man page |
| zoom,variogram-method | Man page |
| zoom.list | Source code |
| zoom.telemetry | Source code |
| zoom.variogram | Source code |
