README.md

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cytoplot

Package for visualizing high-dimensional single-cell data

Installation

You may need to install some libraries:

OSX:

brew install fftw libtiff

Ubuntu:

sudo apt-get install -y libfftw3-dev libtiff5 libtiff5-dev 

Install the package:

install.packages("devtools")

install.packages("BiocInstaller", repos = "https://bioconductor.org/packages/3.4/bioc")

devtools::install_github("cytomining/cytoplot", 
                         dependencies = TRUE, 
                         build_vignettes = TRUE, 
                         repos = BiocInstaller::biocinstallRepos())

You may need to do run that again in order to build the vignettes correctly (seems like a bug in install_github):

devtools::install_github("cytomining/cytoplot", 
                         dependencies = TRUE, 
                         build_vignettes = TRUE, 
                         force = TRUE,
                         repos = BiocInstaller::biocinstallRepos())


cytomining/cytoplot documentation built on Nov. 8, 2017, 12:02 p.m.