cytoscape/RCy3
Functions to Access and Control Cytoscape

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cytoscape/RCy3: Functions to Access and Control Cytoscape
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API

API for cytoscape/RCy3
Functions to Access and Control Cytoscape

Global functions
.CyndexBaseUrl Source code
.CyndexPOST Source code
.CyndexPUT Source code
.FastAppendListGlobal Source code
.autoTableColumnValues Source code
.checkBrightnessContrast Source code
.checkCanvas Source code
.checkFontStyle Source code
.checkHexColor Source code
.checkOpacity Source code
.checkPanelName Source code
.checkPositive Source code
.checkSelected Source code
.checkSlot Source code
.checkUnique Source code
.command2getQuery Source code
.command2postQueryBody Source code
.command2postQueryUrl Source code
.cyError Source code
.cyFinally Source code
.cyPalette Source code
.cyWarnings Source code
.edgeNameToEdgeSUID Source code
.edgeSUIDToEdgeName Source code
.edgeSet2JSON Source code
.exportShowImage Man page
.genArrowMap Source code
.genColorMap Source code
.genDimMap Source code
.genLineStyleMap Source code
.genOpacityMap Source code
.genShapeMap Source code
.getDefaultSandbox Man page Source code
.getFilterJson Source code
.getRequester Man page Source code
.nodeNameToNodeSUID Source code
.nodeSUIDToNodeName Source code
.nodeSet2JSON Source code
.normalizeRotation Source code
.parseEdges Source code
.pathURLencode Source code
.postCreateFilter Source code
.prepGetQueryArgs Source code
.prepPostQueryLists Source code Source code
.sandboxOp Source code
.tableColumnExists Source code
.verifySupportedVersions Source code
AddToGroup Man page Source code
RCy3 Man page
RemoveFromGroup Man page Source code
UpdateAnnotationBoundedText Man page Source code
addAnnotationBoundedText Man page Source code
addAnnotationImage Man page Source code
addAnnotationShape Man page Source code
addAnnotationText Man page Source code
addCyEdges Man page
addCyNodes Man page Source code
analyzeNetwork Man page Source code
applyFilter Man page Source code
bundleEdges Man page Source code
checkNotebookIsRunning Man page Source code
checkRunningRemote Man page Source code
clearEdgeBends Man page Source code
clearEdgePropertyBypass Man page Source code
clearNetworkCenterBypass Man page Source code
clearNetworkPropertyBypass Man page Source code
clearNetworkZoomBypass Man page Source code
clearNodeOpacityBypass Man page
clearNodePropertyBypass Man page Source code
clearSelection Man page Source code
cloneNetwork Man page Source code
closeSession Man page Source code
collapseGroup Man page Source code
commandEcho Man page Source code
commandOpenDialog Man page Source code
commandPause Man page Source code
commandQuit Man page Source code
commandRunFile Man page Source code
commandSleep Man page Source code
commandsAPI Man page Source code
commandsGET Man page Source code
commandsHelp Man page Source code
commandsPOST Man page Source code
commandsRun Man page Source code
copyVisualStyle Man page
createColumnFilter Man page Source code
createCompositeFilter Man page Source code
createCytoscapejsFromNetwork Man page Source code
createDegreeFilter Man page Source code
createGraphFromNetwork Man page
createGroup Man page Source code
createGroupByColumn Man page Source code
createIgraphFromNetwork Man page Source code
createNetworkFromCytoscapejs Man page Source code
createNetworkFromDataFrames Man page Source code
createNetworkFromGraph Man page
createNetworkFromIgraph Man page Source code
createSubnetwork Man page Source code
createView Man page Source code
createVisualStyle Man page Source code
cybrowserClose Man page Source code
cybrowserDialog Man page Source code
cybrowserHide Man page Source code
cybrowserList Man page Source code
cybrowserSend Man page Source code
cybrowserShow Man page Source code
cybrowserVersion Man page Source code
cyrestAPI Man page Source code
cyrestDELETE Man page Source code
cyrestGET Man page Source code
cyrestPOST Man page Source code
cyrestPUT Man page Source code
cytoscapeApiVersions Man page Source code
cytoscapeFreeMemory Man page Source code
cytoscapeMemoryStatus Man page Source code
cytoscapeNumberOfCores Man page Source code
cytoscapePing Man page Source code
cytoscapeVersionInfo Man page Source code
deleteAllNetworks Man page
deleteAllVisualStyle Man page Source code
deleteAnnotation Man page Source code
deleteDuplicateEdges Man page Source code
deleteGroup Man page Source code
deleteNetwork Man page
deleteSelectedEdges Man page Source code
deleteSelectedNodes Man page Source code
deleteSelfLoops Man page Source code
deleteStyleMapping Man page Source code
deleteTableColumn Man page Source code
deleteVisualStyle Man page Source code
diffusionAdvanced Man page Source code
diffusionBasic Man page Source code
disableApp Man page
doInitializeSandbox Man page Source code
doRequestRemote Man page Source code
doSetSandbox Man page Source code
dockPanel Man page Source code
enableApp Man page
expandGroup Man page Source code
exportFilters Man page Source code
exportImage Man page Source code
exportJPG Man page Source code
exportNetwork Man page
exportNetworkToNDEx Man page Source code
exportPDF Man page Source code
exportPNG Man page Source code
exportPS Man page Source code
exportSVG Man page Source code
exportVisualStyles Man page Source code
findRemoteCytoscape Man page Source code
fitContent Man page Source code
floatPanel Man page Source code
getAbsSandboxPath Man page Source code
getAllEdges Man page Source code
getAllNodes Man page Source code
getAllStyleMappings Man page Source code
getAnnotationList Man page Source code
getAppInformation Man page
getAppStatus Man page
getAppUpdates Man page
getArrowShapes Man page Source code
getAvailableApps Man page
getBackgroundColorDefault Man page Source code
getBrowserClientChannel Man page Source code
getBrowserClientJs Man page Source code
getCollectionList Man page Source code
getCollectionName Man page Source code
getCollectionNetworks Man page Source code
getCollectionSuid Man page Source code
getCurrentSandbox Man page Source code
getCurrentSandboxName Man page Source code
getCurrentSandboxPath Man page Source code
getCurrentStyle Man page Source code
getDefaultSandbox Man page Source code
getDefaultSandboxPath Man page Source code
getDisabledApps Man page
getEdgeColor Man page
getEdgeCount Man page Source code
getEdgeInfo Man page Source code
getEdgeLineStyle Man page
getEdgeLineWidth Man page
getEdgeProperty Man page Source code
getEdgeSelectionColorDefault Man page Source code
getEdgeTargetArrowShape Man page
getFilterList Man page Source code
getFirstNeighbors Man page
getGroupInfo Man page Source code
getInstalledApps Man page
getJupyterBridgeURL Man page Source code
getLayoutNameMapping Man page Source code
getLayoutNames Man page Source code
getLayoutPropertyNames Man page Source code
getLayoutPropertyType Man page Source code
getLayoutPropertyValue Man page
getLineStyles Man page Source code
getNetworkCenter Man page Source code
getNetworkCount Man page Source code
getNetworkList Man page Source code
getNetworkNDExId Man page Source code
getNetworkName Man page Source code
getNetworkProperty Man page Source code
getNetworkSuid Man page Source code
getNetworkViewSuid Man page Source code
getNetworkViews Man page Source code
getNetworkZoom Man page Source code
getNodeColor Man page
getNodeCount Man page Source code
getNodeHeight Man page
getNodeLabelPosition Man page
getNodeLabelPositionDefault Man page Source code
getNodePosition Man page
getNodeProperty Man page Source code
getNodeSelectionColorDefault Man page Source code
getNodeShapes Man page
getNodeSize Man page
getNodeWidth Man page
getNotebookIsRunning Man page Source code
getSandboxReinitialize Man page Source code
getSelectedEdgeCount Man page Source code
getSelectedEdges Man page
getSelectedNodeCount Man page Source code
getSelectedNodes Man page Source code
getStyleDependencies Man page Source code
getStyleMapping Man page Source code
getTableColumnNames Man page Source code
getTableColumnTypes Man page Source code
getTableColumns Man page Source code
getTableValue Man page Source code
getUninstalledApps Man page
getVisualPropertyDefault Man page Source code
getVisualPropertyNames Man page
getVisualStyleJSON Man page
getVisualStyleNames Man page Source code
groupAnnotation Man page Source code
hideAllPanels Man page Source code
hideEdges Man page
hideNodes Man page Source code
hidePanel Man page Source code
hideSelectedEdges Man page
hideSelectedNodes Man page
importFileFromUrl Man page Source code
importFilters Man page Source code
importNetworkFromFile Man page Source code
importNetworkFromNDEx Man page
importVisualStyles Man page Source code
installApp Man page
invertEdgeSelection Man page Source code
invertNodeSelection Man page Source code
layoutCopycat Man page Source code
layoutNetwork Man page Source code
listGroups Man page Source code
loadTableData Man page Source code
lockNodeDimensions Man page
makeSimpleGraph Man page Source code
makeSimpleIgraph Man page Source code
mapTableColumn Man page Source code
mapVisualProperty Man page Source code
matchArrowColorToEdge Man page
mergeNetworks Man page Source code
notebookExportShowImage Man page
notebookShowImage Man page
openAppStore Man page
openSession Man page Source code
paletteColorBrewerAccent Man page Source code
paletteColorBrewerBlues Man page Source code
paletteColorBrewerBrBG Man page Source code
paletteColorBrewerBuGn Man page Source code
paletteColorBrewerBuPu Man page Source code
paletteColorBrewerDark2 Man page Source code
paletteColorBrewerGnBu Man page Source code
paletteColorBrewerGreens Man page Source code
paletteColorBrewerGreys Man page Source code
paletteColorBrewerOrRd Man page Source code
paletteColorBrewerOranges Man page Source code
paletteColorBrewerPRGn Man page Source code
paletteColorBrewerPaired Man page Source code
paletteColorBrewerPastel1 Man page Source code
paletteColorBrewerPastel2 Man page Source code
paletteColorBrewerPiYG Man page Source code
paletteColorBrewerPuBu Man page Source code
paletteColorBrewerPuBuGn Man page Source code
paletteColorBrewerPuOr Man page Source code
paletteColorBrewerPuRd Man page Source code
paletteColorBrewerPurples Man page Source code
paletteColorBrewerRdBu Man page Source code
paletteColorBrewerRdPu Man page Source code
paletteColorBrewerRdYlBu Man page Source code
paletteColorBrewerReds Man page Source code
paletteColorBrewerSet1 Man page Source code
paletteColorBrewerSet2 Man page Source code
paletteColorBrewerSet3 Man page Source code
paletteColorBrewerYlGn Man page Source code
paletteColorBrewerYlGnBu Man page Source code
paletteColorBrewerYlOrBr Man page Source code
paletteColorBrewerYlOrRd Man page Source code
paletteColorRandom Man page Source code
paletteColorVirdis Man page Source code
removeNodeCustomGraphics Man page Source code
renameNetwork Man page Source code
renameTableColumn Man page Source code
resetDefaultSandbox Man page Source code
rotateLayout Man page
runningRemoteCheck Man page Source code
sandboxGetFileInfo Man page Source code
sandboxGetFrom Man page Source code
sandboxInitializer Man page Source code
sandboxRemove Man page Source code
sandboxRemoveFile Man page Source code
sandboxSendTo Man page Source code
sandboxSet Man page Source code
sandboxUrlTo Man page Source code
saveSession Man page Source code
scaleLayout Man page
selectAll Man page Source code
selectAllEdges Man page Source code
selectAllNodes Man page Source code
selectEdges Man page Source code
selectEdgesAdjacentToNodes Man page Source code
selectEdgesAdjacentToSelectedNodes Man page Source code
selectEdgesConnectingSelectedNodes Man page Source code
selectFirstNeighbors Man page Source code
selectNodes Man page Source code
selectNodesConnectedBySelectedEdges Man page Source code
setBackgroundColorDefault Man page Source code
setCatchupFilterSecs Man page Source code
setCatchupNetworkSecs Man page Source code
setCurrentNetwork Man page Source code
setCurrentSandbox Man page Source code
setCurrentView Man page Source code
setDefaultSandbox Man page Source code
setDefaultSandboxPath Man page Source code
setEdgeColorBypass Man page
setEdgeColorDefault Man page Source code
setEdgeColorMapping Man page
setEdgeFontFaceBypass Man page Source code
setEdgeFontFaceDefault Man page Source code
setEdgeFontFaceMapping Man page Source code
setEdgeFontSizeBypass Man page Source code
setEdgeFontSizeDefault Man page Source code
setEdgeFontSizeMapping Man page
setEdgeLabelBypass Man page Source code
setEdgeLabelColorBypass Man page
setEdgeLabelColorDefault Man page Source code
setEdgeLabelColorMapping Man page
setEdgeLabelDefault Man page Source code
setEdgeLabelMapping Man page
setEdgeLabelOpacityBypass Man page Source code
setEdgeLabelOpacityDefault Man page Source code
setEdgeLabelOpacityMapping Man page Source code
setEdgeLineStyleBypass Man page Source code
setEdgeLineStyleDefault Man page Source code
setEdgeLineStyleMapping Man page
setEdgeLineWidthBypass Man page Source code
setEdgeLineWidthDefault Man page Source code
setEdgeLineWidthMapping Man page
setEdgeOpacityBypass Man page
setEdgeOpacityDefault Man page Source code
setEdgeOpacityMapping Man page
setEdgePropertyBypass Man page Source code
setEdgeSelectionColorDefault Man page Source code
setEdgeSourceArrowColorBypass Man page Source code
setEdgeSourceArrowColorDefault Man page Source code
setEdgeSourceArrowColorMapping Man page
setEdgeSourceArrowMapping Man page
setEdgeSourceArrowShapeBypass Man page Source code
setEdgeSourceArrowShapeDefault Man page Source code
setEdgeSourceArrowShapeMapping Man page Source code
setEdgeTargetArrowColorBypass Man page Source code
setEdgeTargetArrowColorDefault Man page Source code
setEdgeTargetArrowColorMapping Man page
setEdgeTargetArrowMapping Man page
setEdgeTargetArrowShapeBypass Man page
setEdgeTargetArrowShapeDefault Man page Source code
setEdgeTargetArrowShapeMapping Man page Source code
setEdgeTooltipBypass Man page
setEdgeTooltipDefault Man page Source code
setEdgeTooltipMapping Man page
setLayoutProperties Man page
setModelPropagationSecs Man page Source code
setNetworkCenterBypass Man page Source code
setNetworkPropertyBypass Man page Source code
setNetworkZoomBypass Man page Source code
setNodeBorderColorBypass Man page
setNodeBorderColorDefault Man page Source code
setNodeBorderColorMapping Man page
setNodeBorderOpacityBypass Man page
setNodeBorderOpacityDefault Man page Source code
setNodeBorderOpacityMapping Man page Source code
setNodeBorderWidthBypass Man page
setNodeBorderWidthDefault Man page Source code
setNodeBorderWidthMapping Man page
setNodeColorBypass Man page
setNodeColorDefault Man page Source code
setNodeColorMapping Man page
setNodeComboOpacityMapping Man page
setNodeCustomBarChart Man page Source code
setNodeCustomBoxChart Man page Source code
setNodeCustomHeatMapChart Man page Source code
setNodeCustomLineChart Man page Source code
setNodeCustomLinearGradient Man page Source code
setNodeCustomPieChart Man page Source code
setNodeCustomPosition Man page Source code
setNodeCustomRadialGradient Man page Source code
setNodeCustomRingChart Man page Source code
setNodeFillOpacityBypass Man page
setNodeFillOpacityDefault Man page Source code
setNodeFillOpacityMapping Man page Source code
setNodeFontFaceBypass Man page Source code
setNodeFontFaceDefault Man page Source code
setNodeFontFaceMapping Man page Source code
setNodeFontSizeBypass Man page Source code
setNodeFontSizeDefault Man page Source code
setNodeFontSizeMapping Man page
setNodeHeightBypass Man page
setNodeHeightDefault Man page Source code
setNodeHeightMapping Man page
setNodeLabelBypass Man page Source code
setNodeLabelColorBypass Man page
setNodeLabelColorDefault Man page Source code
setNodeLabelColorMapping Man page
setNodeLabelDefault Man page Source code
setNodeLabelMapping Man page
setNodeLabelOpacityBypass Man page
setNodeLabelOpacityDefault Man page Source code
setNodeLabelOpacityMapping Man page Source code
setNodeLabelPositionBypass Man page Source code
setNodeLabelPositionDefault Man page Source code
setNodeOpacityBypass Man page
setNodePositionBypass Man page
setNodePropertyBypass Man page Source code
setNodeSelectionColorDefault Man page Source code
setNodeShapeBypass Man page
setNodeShapeDefault Man page Source code
setNodeShapeMapping Man page
setNodeSizeBypass Man page
setNodeSizeDefault Man page Source code
setNodeSizeMapping Man page
setNodeTooltipBypass Man page Source code
setNodeTooltipDefault Man page Source code
setNodeTooltipMapping Man page
setNodeWidthBypass Man page
setNodeWidthDefault Man page Source code
setNodeWidthMapping Man page
setNotebookIsRunning Man page Source code
setSandboxReinitialize Man page Source code
setStyleDependencies Man page Source code
setVisualPropertyDefault Man page Source code
setVisualStyle Man page Source code
spoofResponse Man page
spoofResponse-class Man page
syncNodeCustomGraphicsSize Man page
toggleGraphicsDetails Man page
ungroupAnnotation Man page Source code
unhideAll Man page Source code
unhideEdges Man page
unhideNodes Man page Source code
uninstallApp Man page
updateAnnotationImage Man page Source code
updateAnnotationShape Man page Source code
updateAnnotationText Man page Source code
updateApp Man page
updateGroupAnnotation Man page Source code
updateNetworkInNDEx Man page
updateStyleDefaults Man page Source code
updateStyleMapping Man page Source code
cytoscape/RCy3 documentation built on April 7, 2024, 2:17 p.m.

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