Files in cytoscape/RCy3

Functions to Access and Control Cytoscape

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS

R/Annotations.R R/Apps.R R/Collections.R R/Commands.R R/CyNDEx.R R/CytoscapeSystem.R R/Filters.R R/Groups.R R/Layouts.R R/NetworkSelection.R R/NetworkViews.R R/Networks.R R/Notebook.R R/RCy3-deprecated.R R/RCy3-notebook.R R/RCy3-sandbox.R R/RCy3-utils.R R/RCy3.R R/Sandbox.R R/Session.R R/StyleBypasses.R R/StyleDefaults.R R/StyleDependencies.R R/StyleMappings.R R/StyleValues.R R/Styles.R R/Tables.R R/Tools.R R/UserInterface.R

RCy3.Rproj

README.md

docs/404.html

docs/LICENSE-text.html

docs/articles/Cancer-networks-and-data.html

docs/articles/Cancer-networks-and-data_files/header-attrs-2.8/header-attrs.js

docs/articles/Custom-Graphics.html

docs/articles/Custom-Graphics_files/header-attrs-2.8/header-attrs.js

docs/articles/Cytoscape-and-NDEx.html

docs/articles/Cytoscape-and-NDEx_files/header-attrs-2.8/header-attrs.js

docs/articles/Cytoscape-and-graphNEL.html

docs/articles/Cytoscape-and-graphNEL_files/header-attrs-2.8/header-attrs.js

docs/articles/Cytoscape-and-iGraph.html

docs/articles/Cytoscape-and-iGraph_files/header-attrs-2.8/header-attrs.js

docs/articles/Filtering-Networks.html

docs/articles/Filtering-Networks_files/header-attrs-2.8/header-attrs.js

docs/articles/Group-nodes.html

docs/articles/Group-nodes_files/header-attrs-2.8/header-attrs.js

docs/articles/Identifier-mapping.html

docs/articles/Identifier-mapping_files/header-attrs-2.8/header-attrs.js

docs/articles/Importing-data.html

docs/articles/Importing-data_files/header-attrs-2.8/header-attrs.js

docs/articles/Network-functions-and-visualization.html

docs/articles/Network-functions-and-visualization_files/header-attrs-2.8/header-attrs.js

docs/articles/Overview-of-RCy3.html

docs/articles/Overview-of-RCy3_files/header-attrs-2.8/header-attrs.js

docs/articles/Phylogenetic-trees.html

docs/articles/Phylogenetic-trees_files/header-attrs-2.8/header-attrs.js

docs/articles/Upgrading-existing-scripts.html

docs/articles/Upgrading-existing-scripts_files/header-attrs-2.8/header-attrs.js

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/AddToGroup.html

docs/reference/RCy3.html

docs/reference/RemoveFromGroup.html

docs/reference/UpdateAnnotationBoundedText.html

docs/reference/addAnnotationBoundedText.html

docs/reference/addAnnotationImage.html

docs/reference/addAnnotationShape.html

docs/reference/addAnnotationText.html

docs/reference/addCyEdges.html

docs/reference/addCyNodes.html

docs/reference/analyzeNetwork.html

docs/reference/applyFilter.html

docs/reference/bundleEdges.html

docs/reference/checkNotebookIsRunning.html

docs/reference/checkRunningRemote.html

docs/reference/clearEdgeBends.html

docs/reference/clearEdgePropertyBypass.html

docs/reference/clearNetworkCenterBypass.html

docs/reference/clearNetworkPropertyBypass.html

docs/reference/clearNetworkZoomBypass.html

docs/reference/clearNodeOpacityBypass.html

docs/reference/clearNodePropertyBypass.html

docs/reference/clearSelection.html

docs/reference/cloneNetwork.html

docs/reference/closeSession.html

docs/reference/collapseGroup.html

docs/reference/commandEcho.html

docs/reference/commandOpenDialog.html

docs/reference/commandPause.html

docs/reference/commandQuit.html

docs/reference/commandRunFile.html

docs/reference/commandSleep.html

docs/reference/commandsAPI.html

docs/reference/commandsGET.html

docs/reference/commandsHelp.html

docs/reference/commandsPOST.html

docs/reference/commandsRun.html

docs/reference/copyVisualStyle.html

docs/reference/createColumnFilter.html

docs/reference/createCompositeFilter.html

docs/reference/createDegreeFilter.html

docs/reference/createGraphFromNetwork.html

docs/reference/createGroup.html

docs/reference/createGroupByColumn.html

docs/reference/createIgraphFromNetwork.html

docs/reference/createNetworkFromDataFrames.html

docs/reference/createNetworkFromGraph.html

docs/reference/createNetworkFromIgraph.html

docs/reference/createSubnetwork.html

docs/reference/createVisualStyle.html

docs/reference/cybrowserClose.html

docs/reference/cybrowserDialog.html

docs/reference/cybrowserHide.html

docs/reference/cybrowserList.html

docs/reference/cybrowserSend.html

docs/reference/cybrowserShow.html

docs/reference/cybrowserVersion.html

docs/reference/cyrestAPI.html

docs/reference/cyrestDELETE.html

docs/reference/cyrestGET.html

docs/reference/cyrestPOST.html

docs/reference/cyrestPUT.html

docs/reference/cytoscapeApiVersions.html

docs/reference/cytoscapeFreeMemory.html

docs/reference/cytoscapeMemoryStatus.html

docs/reference/cytoscapeNumberOfCores.html

docs/reference/cytoscapePing.html

docs/reference/cytoscapeVersionInfo.html

docs/reference/deleteAllNetworks.html

docs/reference/deleteAnnotation.html

docs/reference/deleteDuplicateEdges.html

docs/reference/deleteGroup.html

docs/reference/deleteNetwork.html

docs/reference/deleteSelectedEdges.html

docs/reference/deleteSelectedNodes.html

docs/reference/deleteSelfLoops.html

docs/reference/deleteStyleMapping.html

docs/reference/deleteTableColumn.html

docs/reference/deleteVisualStyle.html

docs/reference/diffusionAdvanced.html

docs/reference/diffusionBasic.html

docs/reference/disableApp.html

docs/reference/doInitializeSandbox.html

docs/reference/doRequestRemote.html

docs/reference/doSetSandbox.html

docs/reference/dockPanel.html

docs/reference/dot-exportShowImage.html

docs/reference/dot-getDefaultSandbox.html

docs/reference/dot-getRequester.html

docs/reference/enableApp.html

docs/reference/expandGroup.html

docs/reference/exportFilters.html

docs/reference/exportImage.html

docs/reference/exportNetwork.html

docs/reference/exportNetworkToNDEx.html

docs/reference/exportVisualStyles.html

docs/reference/findRemoteCytoscape.html

docs/reference/fitContent.html

docs/reference/floatPanel.html

docs/reference/getAbsSandboxPath.html

docs/reference/getAllEdges.html

docs/reference/getAllNodes.html

docs/reference/getAllStyleMappings.html

docs/reference/getAnnotationList.html

docs/reference/getAppInformation.html

docs/reference/getAppStatus.html

docs/reference/getAppUpdates.html

docs/reference/getArrowShapes.html

docs/reference/getAvailableApps.html

docs/reference/getBackgroundColorDefault.html

docs/reference/getBrowserClientChannel.html

docs/reference/getBrowserClientJs.html

docs/reference/getCollectionList.html

docs/reference/getCollectionName.html

docs/reference/getCollectionNetworks.html

docs/reference/getCollectionSuid.html

docs/reference/getCurrentSandbox.html

docs/reference/getCurrentSandboxName.html

docs/reference/getCurrentSandboxPath.html

docs/reference/getCurrentStyle.html

docs/reference/getDefaultSandbox.html

docs/reference/getDefaultSandboxPath.html

docs/reference/getDisabledApps.html

docs/reference/getEdgeColor.html

docs/reference/getEdgeCount.html

docs/reference/getEdgeInfo.html

docs/reference/getEdgeLineStyle.html

docs/reference/getEdgeLineWidth.html

docs/reference/getEdgeProperty.html

docs/reference/getEdgeSelectionColorDefault.html

docs/reference/getEdgeTargetArrowShape.html

docs/reference/getFilterList.html

docs/reference/getFirstNeighbors.html

docs/reference/getGroupInfo.html

docs/reference/getInstalledApps.html

docs/reference/getJupyterBridgeURL.html

docs/reference/getLayoutNameMapping.html

docs/reference/getLayoutNames.html

docs/reference/getLayoutPropertyNames.html

docs/reference/getLayoutPropertyType.html

docs/reference/getLayoutPropertyValue.html

docs/reference/getLineStyles.html

docs/reference/getNetworkCenter.html

docs/reference/getNetworkCount.html

docs/reference/getNetworkList.html

docs/reference/getNetworkNDExId.html

docs/reference/getNetworkName.html

docs/reference/getNetworkProperty.html

docs/reference/getNetworkSuid.html

docs/reference/getNetworkViewSuid.html

docs/reference/getNetworkViews.html

docs/reference/getNetworkZoom.html

docs/reference/getNodeColor.html

docs/reference/getNodeCount.html

docs/reference/getNodeHeight.html

docs/reference/getNodePosition.html

docs/reference/getNodeProperty.html

docs/reference/getNodeSelectionColorDefault.html

docs/reference/getNodeShapes.html

docs/reference/getNodeSize.html

docs/reference/getNodeWidth.html

docs/reference/getNotebookIsRunning.html

docs/reference/getSandboxReinitialize.html

docs/reference/getSelectedEdgeCount.html

docs/reference/getSelectedEdges.html

docs/reference/getSelectedNodeCount.html

docs/reference/getSelectedNodes.html

docs/reference/getStyleDependencies.html

docs/reference/getStyleMapping.html

docs/reference/getTableColumnNames.html

docs/reference/getTableColumnTypes.html

docs/reference/getTableColumns.html

docs/reference/getTableValue.html

docs/reference/getUninstalledApps.html

docs/reference/getVisualPropertyDefault.html

docs/reference/getVisualPropertyNames.html

docs/reference/getVisualStyleNames.html

docs/reference/groupAnnotation.html

docs/reference/hideAllPanels.html

docs/reference/hideEdges.html

docs/reference/hideNodes.html

docs/reference/hidePanel.html

docs/reference/hideSelectedEdges.html

docs/reference/hideSelectedNodes.html

docs/reference/importFilters.html

docs/reference/importNetworkFromFile.html

docs/reference/importNetworkFromNDEx.html

docs/reference/importVisualStyles.html

docs/reference/index.html

docs/reference/installApp.html

docs/reference/invertEdgeSelection.html

docs/reference/invertNodeSelection.html

docs/reference/layoutCopycat.html

docs/reference/layoutNetwork.html

docs/reference/listGroups.html

docs/reference/loadTableData.html

docs/reference/lockNodeDimensions.html

docs/reference/makeSimpleGraph.html

docs/reference/makeSimpleIgraph.html

docs/reference/mapTableColumn.html

docs/reference/mapVisualProperty.html

docs/reference/matchArrowColorToEdge.html

docs/reference/mergeNetworks.html

docs/reference/notebookExportShowImage.html

docs/reference/notebookShowImage.html

docs/reference/openAppStore.html

docs/reference/openSession.html

docs/reference/paletteColorBrewerAccent.html

docs/reference/paletteColorBrewerBlues.html

docs/reference/paletteColorBrewerBrBG.html

docs/reference/paletteColorBrewerBuGn.html

docs/reference/paletteColorBrewerBuPu.html

docs/reference/paletteColorBrewerDark2.html

docs/reference/paletteColorBrewerGnBu.html

docs/reference/paletteColorBrewerGreens.html

docs/reference/paletteColorBrewerGreys.html

docs/reference/paletteColorBrewerOrRd.html

docs/reference/paletteColorBrewerOranges.html

docs/reference/paletteColorBrewerPRGn.html

docs/reference/paletteColorBrewerPaired.html

docs/reference/paletteColorBrewerPastel1.html

docs/reference/paletteColorBrewerPastel2.html

docs/reference/paletteColorBrewerPiYG.html

docs/reference/paletteColorBrewerPuBu.html

docs/reference/paletteColorBrewerPuBuGn.html

docs/reference/paletteColorBrewerPuOr.html

docs/reference/paletteColorBrewerPuRd.html

docs/reference/paletteColorBrewerPurples.html

docs/reference/paletteColorBrewerRdBu.html

docs/reference/paletteColorBrewerRdPu.html

docs/reference/paletteColorBrewerRdYlBu.html

docs/reference/paletteColorBrewerReds.html

docs/reference/paletteColorBrewerSet1.html

docs/reference/paletteColorBrewerSet2.html

docs/reference/paletteColorBrewerSet3.html

docs/reference/paletteColorBrewerYlGn.html

docs/reference/paletteColorBrewerYlGnBu.html

docs/reference/paletteColorBrewerYlOrBr.html

docs/reference/paletteColorBrewerYlOrRd.html

docs/reference/paletteColorRandom.html

docs/reference/removeNodeCustomGraphics.html

docs/reference/renameNetwork.html

docs/reference/renameTableColumn.html

docs/reference/resetDefaultSandbox.html

docs/reference/runningRemoteCheck.html

docs/reference/sandboxGetFileInfo.html

docs/reference/sandboxGetFrom.html

docs/reference/sandboxInitializer.html

docs/reference/sandboxRemove.html

docs/reference/sandboxRemoveFile.html

docs/reference/sandboxSendTo.html

docs/reference/sandboxSet.html

docs/reference/sandboxUrlTo.html

docs/reference/saveSession.html

docs/reference/selectAllEdges.html

docs/reference/selectAllNodes.html

docs/reference/selectEdges.html

docs/reference/selectEdgesAdjacentToSelectedNodes.html

docs/reference/selectEdgesConnectingSelectedNodes.html

docs/reference/selectFirstNeighbors.html

docs/reference/selectNodes.html

docs/reference/selectNodesConnectedBySelectedEdges.html

docs/reference/setBackgroundColorDefault.html

docs/reference/setCatchupFilterSecs.html

docs/reference/setCatchupNetworkSecs.html

docs/reference/setCurrentNetwork.html

docs/reference/setCurrentSandbox.html

docs/reference/setCurrentView.html

docs/reference/setDefaultSandbox.html

docs/reference/setDefaultSandboxPath.html

docs/reference/setEdgeColorBypass.html

docs/reference/setEdgeColorDefault.html

docs/reference/setEdgeColorMapping.html

docs/reference/setEdgeFontFaceBypass.html

docs/reference/setEdgeFontFaceDefault.html

docs/reference/setEdgeFontFaceMapping.html

docs/reference/setEdgeFontSizeBypass.html

docs/reference/setEdgeFontSizeDefault.html

docs/reference/setEdgeFontSizeMapping.html

docs/reference/setEdgeLabelBypass.html

docs/reference/setEdgeLabelColorBypass.html

docs/reference/setEdgeLabelColorDefault.html

docs/reference/setEdgeLabelColorMapping.html

docs/reference/setEdgeLabelDefault.html

docs/reference/setEdgeLabelMapping.html

docs/reference/setEdgeLabelOpacityBypass.html

docs/reference/setEdgeLabelOpacityDefault.html

docs/reference/setEdgeLabelOpacityMapping.html

docs/reference/setEdgeLineStyleBypass.html

docs/reference/setEdgeLineStyleDefault.html

docs/reference/setEdgeLineStyleMapping.html

docs/reference/setEdgeLineWidthBypass.html

docs/reference/setEdgeLineWidthDefault.html

docs/reference/setEdgeLineWidthMapping.html

docs/reference/setEdgeOpacityBypass.html

docs/reference/setEdgeOpacityDefault.html

docs/reference/setEdgeOpacityMapping.html

docs/reference/setEdgePropertyBypass.html

docs/reference/setEdgeSelectionColorDefault.html

docs/reference/setEdgeSourceArrowColorBypass.html

docs/reference/setEdgeSourceArrowColorDefault.html

docs/reference/setEdgeSourceArrowColorMapping.html

docs/reference/setEdgeSourceArrowMapping.html

docs/reference/setEdgeSourceArrowShapeBypass.html

docs/reference/setEdgeSourceArrowShapeDefault.html

docs/reference/setEdgeSourceArrowShapeMapping.html

docs/reference/setEdgeTargetArrowColorBypass.html

docs/reference/setEdgeTargetArrowColorDefault.html

docs/reference/setEdgeTargetArrowColorMapping.html

docs/reference/setEdgeTargetArrowMapping.html

docs/reference/setEdgeTargetArrowShapeBypass.html

docs/reference/setEdgeTargetArrowShapeDefault.html

docs/reference/setEdgeTargetArrowShapeMapping.html

docs/reference/setEdgeTooltipBypass.html

docs/reference/setEdgeTooltipDefault.html

docs/reference/setEdgeTooltipMapping.html

docs/reference/setLayoutProperties.html

docs/reference/setModelPropagationSecs.html

docs/reference/setNetworkCenterBypass.html

docs/reference/setNetworkPropertyBypass.html

docs/reference/setNetworkZoomBypass.html

docs/reference/setNodeBorderColorBypass.html

docs/reference/setNodeBorderColorDefault.html

docs/reference/setNodeBorderColorMapping.html

docs/reference/setNodeBorderOpacityBypass.html

docs/reference/setNodeBorderOpacityDefault.html

docs/reference/setNodeBorderOpacityMapping.html

docs/reference/setNodeBorderWidthBypass.html

docs/reference/setNodeBorderWidthDefault.html

docs/reference/setNodeBorderWidthMapping.html

docs/reference/setNodeColorBypass.html

docs/reference/setNodeColorDefault.html

docs/reference/setNodeColorMapping.html

docs/reference/setNodeComboOpacityMapping.html

docs/reference/setNodeCustomBarChart.html

docs/reference/setNodeCustomBoxChart.html

docs/reference/setNodeCustomHeatMapChart.html

docs/reference/setNodeCustomLineChart.html

docs/reference/setNodeCustomLinearGradient.html

docs/reference/setNodeCustomPieChart.html

docs/reference/setNodeCustomPosition.html

docs/reference/setNodeCustomRadialGradient.html

docs/reference/setNodeCustomRingChart.html

docs/reference/setNodeFillOpacityBypass.html

docs/reference/setNodeFillOpacityDefault.html

docs/reference/setNodeFillOpacityMapping.html

docs/reference/setNodeFontFaceBypass.html

docs/reference/setNodeFontFaceDefault.html

docs/reference/setNodeFontFaceMapping.html

docs/reference/setNodeFontSizeBypass.html

docs/reference/setNodeFontSizeDefault.html

docs/reference/setNodeFontSizeMapping.html

docs/reference/setNodeHeightBypass.html

docs/reference/setNodeHeightDefault.html

docs/reference/setNodeHeightMapping.html

docs/reference/setNodeLabelBypass.html

docs/reference/setNodeLabelColorBypass.html

docs/reference/setNodeLabelColorDefault.html

docs/reference/setNodeLabelColorMapping.html

docs/reference/setNodeLabelDefault.html

docs/reference/setNodeLabelMapping.html

docs/reference/setNodeLabelOpacityBypass.html

docs/reference/setNodeLabelOpacityDefault.html

docs/reference/setNodeLabelOpacityMapping.html

docs/reference/setNodeOpacityBypass.html

docs/reference/setNodePropertyBypass.html

docs/reference/setNodeSelectionColorDefault.html

docs/reference/setNodeShapeBypass.html

docs/reference/setNodeShapeDefault.html

docs/reference/setNodeShapeMapping.html

docs/reference/setNodeSizeBypass.html

docs/reference/setNodeSizeDefault.html

docs/reference/setNodeSizeMapping.html

docs/reference/setNodeTooltipBypass.html

docs/reference/setNodeTooltipDefault.html

docs/reference/setNodeTooltipMapping.html

docs/reference/setNodeWidthBypass.html

docs/reference/setNodeWidthDefault.html

docs/reference/setNodeWidthMapping.html

docs/reference/setNotebookIsRunning.html

docs/reference/setSandboxReinitialize.html

docs/reference/setStyleDependencies.html

docs/reference/setVisualPropertyDefault.html

docs/reference/setVisualStyle.html

docs/reference/spoofResponse-class.html

docs/reference/syncNodeCustomGraphicsSize.html

docs/reference/toggleGraphicsDetails.html

docs/reference/ungroupAnnotation.html

docs/reference/unhideAll.html

docs/reference/unhideEdges.html

docs/reference/unhideNodes.html

docs/reference/uninstallApp.html

docs/reference/updateAnnotationImage.html

docs/reference/updateAnnotationShape.html

docs/reference/updateAnnotationText.html

docs/reference/updateApp.html

docs/reference/updateGroupAnnotation.html

docs/reference/updateNetworkInNDEx.html

docs/reference/updateStyleDefaults.html

docs/reference/updateStyleMapping.html

inst/CITATION

inst/extdata/galExpData.csv

inst/extdata/galFiltered.sif

inst/extdata/lesmis.txt

inst/extdata/phage_ids_with_affiliation.tsv

inst/extdata/phylotree.newick

inst/extdata/prok_tax_from_silva.tsv

inst/extdata/tutorial-brc-expr-mean-dataset.robj

inst/extdata/tutorial-brc-mut-dataset.robj

inst/extdata/tutorial-ovc-expr-mean-dataset.robj

inst/extdata/tutorial-ovc-mut-dataset.robj

inst/extdata/virus_prok_cor_abundant.tsv

inst/unitTests/test_RCy3.R man/AddToGroup.Rd man/RCy3.Rd man/RemoveFromGroup.Rd man/UpdateAnnotationBoundedText.Rd man/addAnnotationBoundedText.Rd man/addAnnotationImage.Rd man/addAnnotationShape.Rd man/addAnnotationText.Rd man/addCyEdges.Rd man/addCyNodes.Rd man/analyzeNetwork.Rd man/applyFilter.Rd man/bundleEdges.Rd man/checkNotebookIsRunning.Rd man/checkRunningRemote.Rd man/clearEdgeBends.Rd man/clearEdgePropertyBypass.Rd man/clearNetworkCenterBypass.Rd man/clearNetworkPropertyBypass.Rd man/clearNetworkZoomBypass.Rd man/clearNodeOpacityBypass.Rd man/clearNodePropertyBypass.Rd man/clearSelection.Rd man/cloneNetwork.Rd man/closeSession.Rd man/collapseGroup.Rd man/commandEcho.Rd man/commandOpenDialog.Rd man/commandPause.Rd man/commandQuit.Rd man/commandRunFile.Rd man/commandSleep.Rd man/commandsAPI.Rd man/commandsGET.Rd man/commandsHelp.Rd man/commandsPOST.Rd man/commandsRun.Rd man/copyVisualStyle.Rd man/createColumnFilter.Rd man/createCompositeFilter.Rd man/createCytoscapejsFromNetwork.Rd man/createDegreeFilter.Rd man/createGraphFromNetwork.Rd man/createGroup.Rd man/createGroupByColumn.Rd man/createIgraphFromNetwork.Rd man/createNetworkFromCytoscapejs.Rd man/createNetworkFromDataFrames.Rd man/createNetworkFromGraph.Rd man/createNetworkFromIgraph.Rd man/createSubnetwork.Rd man/createView.Rd man/createVisualStyle.Rd man/cybrowserClose.Rd man/cybrowserDialog.Rd man/cybrowserHide.Rd man/cybrowserList.Rd man/cybrowserSend.Rd man/cybrowserShow.Rd man/cybrowserVersion.Rd man/cyrestAPI.Rd man/cyrestDELETE.Rd man/cyrestGET.Rd man/cyrestPOST.Rd man/cyrestPUT.Rd man/cytoscapeApiVersions.Rd man/cytoscapeFreeMemory.Rd man/cytoscapeMemoryStatus.Rd man/cytoscapeNumberOfCores.Rd man/cytoscapePing.Rd man/cytoscapeVersionInfo.Rd man/deleteAllNetworks.Rd man/deleteAllVisualStyle.Rd man/deleteAnnotation.Rd man/deleteDuplicateEdges.Rd man/deleteGroup.Rd man/deleteNetwork.Rd man/deleteSelectedEdges.Rd man/deleteSelectedNodes.Rd man/deleteSelfLoops.Rd man/deleteStyleMapping.Rd man/deleteTableColumn.Rd man/deleteVisualStyle.Rd man/diffusionAdvanced.Rd man/diffusionBasic.Rd man/disableApp.Rd man/doInitializeSandbox.Rd man/doRequestRemote.Rd man/doSetSandbox.Rd man/dockPanel.Rd man/dot-exportShowImage.Rd man/dot-getDefaultSandbox.Rd man/dot-getRequester.Rd man/enableApp.Rd man/expandGroup.Rd man/exportFilters.Rd man/exportImage.Rd man/exportJPG.Rd man/exportNetwork.Rd man/exportNetworkToNDEx.Rd man/exportPDF.Rd man/exportPNG.Rd man/exportPS.Rd man/exportSVG.Rd man/exportVisualStyles.Rd man/findRemoteCytoscape.Rd man/fitContent.Rd man/floatPanel.Rd man/getAbsSandboxPath.Rd man/getAllEdges.Rd man/getAllNodes.Rd man/getAllStyleMappings.Rd man/getAnnotationList.Rd man/getAppInformation.Rd man/getAppStatus.Rd man/getAppUpdates.Rd man/getArrowShapes.Rd man/getAvailableApps.Rd man/getBackgroundColorDefault.Rd man/getBrowserClientChannel.Rd man/getBrowserClientJs.Rd man/getCollectionList.Rd man/getCollectionName.Rd man/getCollectionNetworks.Rd man/getCollectionSuid.Rd man/getCurrentSandbox.Rd man/getCurrentSandboxName.Rd man/getCurrentSandboxPath.Rd man/getCurrentStyle.Rd man/getDefaultSandbox.Rd man/getDefaultSandboxPath.Rd man/getDisabledApps.Rd man/getEdgeColor.Rd man/getEdgeCount.Rd man/getEdgeInfo.Rd man/getEdgeLineStyle.Rd man/getEdgeLineWidth.Rd man/getEdgeProperty.Rd man/getEdgeSelectionColorDefault.Rd man/getEdgeTargetArrowShape.Rd man/getFilterList.Rd man/getFirstNeighbors.Rd man/getGroupInfo.Rd man/getInstalledApps.Rd man/getJupyterBridgeURL.Rd man/getLayoutNameMapping.Rd man/getLayoutNames.Rd man/getLayoutPropertyNames.Rd man/getLayoutPropertyType.Rd man/getLayoutPropertyValue.Rd man/getLineStyles.Rd man/getNetworkCenter.Rd man/getNetworkCount.Rd man/getNetworkList.Rd man/getNetworkNDExId.Rd man/getNetworkName.Rd man/getNetworkProperty.Rd man/getNetworkSuid.Rd man/getNetworkViewSuid.Rd man/getNetworkViews.Rd man/getNetworkZoom.Rd man/getNodeColor.Rd man/getNodeCount.Rd man/getNodeHeight.Rd man/getNodeLabelPosition.Rd man/getNodeLabelPositionDefault.Rd man/getNodePosition.Rd man/getNodeProperty.Rd man/getNodeSelectionColorDefault.Rd man/getNodeShapes.Rd man/getNodeSize.Rd man/getNodeWidth.Rd man/getNotebookIsRunning.Rd man/getSandboxReinitialize.Rd man/getSelectedEdgeCount.Rd man/getSelectedEdges.Rd man/getSelectedNodeCount.Rd man/getSelectedNodes.Rd man/getStyleDependencies.Rd man/getStyleMapping.Rd man/getTableColumnNames.Rd man/getTableColumnTypes.Rd man/getTableColumns.Rd man/getTableValue.Rd man/getUninstalledApps.Rd man/getVisualPropertyDefault.Rd man/getVisualPropertyNames.Rd man/getVisualStyleJSON.Rd man/getVisualStyleNames.Rd man/groupAnnotation.Rd man/hideAllPanels.Rd man/hideEdges.Rd man/hideNodes.Rd man/hidePanel.Rd man/hideSelectedEdges.Rd man/hideSelectedNodes.Rd man/importFileFromUrl.Rd man/importFilters.Rd man/importNetworkFromFile.Rd man/importNetworkFromNDEx.Rd man/importVisualStyles.Rd man/installApp.Rd man/invertEdgeSelection.Rd man/invertNodeSelection.Rd man/layoutCopycat.Rd man/layoutNetwork.Rd man/listGroups.Rd man/loadTableData.Rd man/lockNodeDimensions.Rd man/makeSimpleGraph.Rd man/makeSimpleIgraph.Rd man/mapTableColumn.Rd man/mapVisualProperty.Rd man/matchArrowColorToEdge.Rd man/mergeNetworks.Rd man/notebookExportShowImage.Rd man/notebookShowImage.Rd man/openAppStore.Rd man/openSession.Rd man/paletteColorBrewerAccent.Rd man/paletteColorBrewerBlues.Rd man/paletteColorBrewerBrBG.Rd man/paletteColorBrewerBuGn.Rd man/paletteColorBrewerBuPu.Rd man/paletteColorBrewerDark2.Rd man/paletteColorBrewerGnBu.Rd man/paletteColorBrewerGreens.Rd man/paletteColorBrewerGreys.Rd man/paletteColorBrewerOrRd.Rd man/paletteColorBrewerOranges.Rd man/paletteColorBrewerPRGn.Rd man/paletteColorBrewerPaired.Rd man/paletteColorBrewerPastel1.Rd man/paletteColorBrewerPastel2.Rd man/paletteColorBrewerPiYG.Rd man/paletteColorBrewerPuBu.Rd man/paletteColorBrewerPuBuGn.Rd man/paletteColorBrewerPuOr.Rd man/paletteColorBrewerPuRd.Rd man/paletteColorBrewerPurples.Rd man/paletteColorBrewerRdBu.Rd man/paletteColorBrewerRdPu.Rd man/paletteColorBrewerRdYlBu.Rd man/paletteColorBrewerReds.Rd man/paletteColorBrewerSet1.Rd man/paletteColorBrewerSet2.Rd man/paletteColorBrewerSet3.Rd man/paletteColorBrewerYlGn.Rd man/paletteColorBrewerYlGnBu.Rd man/paletteColorBrewerYlOrBr.Rd man/paletteColorBrewerYlOrRd.Rd man/paletteColorRandom.Rd man/paletteColorVirdis.Rd man/removeNodeCustomGraphics.Rd man/renameNetwork.Rd man/renameTableColumn.Rd man/resetDefaultSandbox.Rd man/rotateLayout.Rd man/runningRemoteCheck.Rd man/sandboxGetFileInfo.Rd man/sandboxGetFrom.Rd man/sandboxInitializer.Rd man/sandboxRemove.Rd man/sandboxRemoveFile.Rd man/sandboxSendTo.Rd man/sandboxSet.Rd man/sandboxUrlTo.Rd man/saveSession.Rd man/scaleLayout.Rd man/selectAll.Rd man/selectAllEdges.Rd man/selectAllNodes.Rd man/selectEdges.Rd man/selectEdgesAdjacentToNodes.Rd man/selectEdgesAdjacentToSelectedNodes.Rd man/selectEdgesConnectingSelectedNodes.Rd man/selectFirstNeighbors.Rd man/selectNodes.Rd man/selectNodesConnectedBySelectedEdges.Rd man/setBackgroundColorDefault.Rd man/setCatchupFilterSecs.Rd man/setCatchupNetworkSecs.Rd man/setCurrentNetwork.Rd man/setCurrentSandbox.Rd man/setCurrentView.Rd man/setDefaultSandbox.Rd man/setDefaultSandboxPath.Rd man/setEdgeColorBypass.Rd man/setEdgeColorDefault.Rd man/setEdgeColorMapping.Rd man/setEdgeFontFaceBypass.Rd man/setEdgeFontFaceDefault.Rd man/setEdgeFontFaceMapping.Rd man/setEdgeFontSizeBypass.Rd man/setEdgeFontSizeDefault.Rd man/setEdgeFontSizeMapping.Rd man/setEdgeLabelBypass.Rd man/setEdgeLabelColorBypass.Rd man/setEdgeLabelColorDefault.Rd man/setEdgeLabelColorMapping.Rd man/setEdgeLabelDefault.Rd man/setEdgeLabelMapping.Rd man/setEdgeLabelOpacityBypass.Rd man/setEdgeLabelOpacityDefault.Rd man/setEdgeLabelOpacityMapping.Rd man/setEdgeLineStyleBypass.Rd man/setEdgeLineStyleDefault.Rd man/setEdgeLineStyleMapping.Rd man/setEdgeLineWidthBypass.Rd man/setEdgeLineWidthDefault.Rd man/setEdgeLineWidthMapping.Rd man/setEdgeOpacityBypass.Rd man/setEdgeOpacityDefault.Rd man/setEdgeOpacityMapping.Rd man/setEdgePropertyBypass.Rd man/setEdgeSelectionColorDefault.Rd man/setEdgeSourceArrowColorBypass.Rd man/setEdgeSourceArrowColorDefault.Rd man/setEdgeSourceArrowColorMapping.Rd man/setEdgeSourceArrowMapping.Rd man/setEdgeSourceArrowShapeBypass.Rd man/setEdgeSourceArrowShapeDefault.Rd man/setEdgeSourceArrowShapeMapping.Rd man/setEdgeTargetArrowColorBypass.Rd man/setEdgeTargetArrowColorDefault.Rd man/setEdgeTargetArrowColorMapping.Rd man/setEdgeTargetArrowMapping.Rd man/setEdgeTargetArrowShapeBypass.Rd man/setEdgeTargetArrowShapeDefault.Rd man/setEdgeTargetArrowShapeMapping.Rd man/setEdgeTooltipBypass.Rd man/setEdgeTooltipDefault.Rd man/setEdgeTooltipMapping.Rd man/setLayoutProperties.Rd man/setModelPropagationSecs.Rd man/setNetworkCenterBypass.Rd man/setNetworkPropertyBypass.Rd man/setNetworkZoomBypass.Rd man/setNodeBorderColorBypass.Rd man/setNodeBorderColorDefault.Rd man/setNodeBorderColorMapping.Rd man/setNodeBorderOpacityBypass.Rd man/setNodeBorderOpacityDefault.Rd man/setNodeBorderOpacityMapping.Rd man/setNodeBorderWidthBypass.Rd man/setNodeBorderWidthDefault.Rd man/setNodeBorderWidthMapping.Rd man/setNodeColorBypass.Rd man/setNodeColorDefault.Rd man/setNodeColorMapping.Rd man/setNodeComboOpacityMapping.Rd man/setNodeCustomBarChart.Rd man/setNodeCustomBoxChart.Rd man/setNodeCustomHeatMapChart.Rd man/setNodeCustomLineChart.Rd man/setNodeCustomLinearGradient.Rd man/setNodeCustomPieChart.Rd man/setNodeCustomPosition.Rd man/setNodeCustomRadialGradient.Rd man/setNodeCustomRingChart.Rd man/setNodeFillOpacityBypass.Rd man/setNodeFillOpacityDefault.Rd man/setNodeFillOpacityMapping.Rd man/setNodeFontFaceBypass.Rd man/setNodeFontFaceDefault.Rd man/setNodeFontFaceMapping.Rd man/setNodeFontSizeBypass.Rd man/setNodeFontSizeDefault.Rd man/setNodeFontSizeMapping.Rd man/setNodeHeightBypass.Rd man/setNodeHeightDefault.Rd man/setNodeHeightMapping.Rd man/setNodeLabelBypass.Rd man/setNodeLabelColorBypass.Rd man/setNodeLabelColorDefault.Rd man/setNodeLabelColorMapping.Rd man/setNodeLabelDefault.Rd man/setNodeLabelMapping.Rd man/setNodeLabelOpacityBypass.Rd man/setNodeLabelOpacityDefault.Rd man/setNodeLabelOpacityMapping.Rd man/setNodeLabelPositionBypass.Rd man/setNodeLabelPositionDefault.Rd man/setNodeOpacityBypass.Rd man/setNodePositionBypass.Rd man/setNodePropertyBypass.Rd man/setNodeSelectionColorDefault.Rd man/setNodeShapeBypass.Rd man/setNodeShapeDefault.Rd man/setNodeShapeMapping.Rd man/setNodeSizeBypass.Rd man/setNodeSizeDefault.Rd man/setNodeSizeMapping.Rd man/setNodeTooltipBypass.Rd man/setNodeTooltipDefault.Rd man/setNodeTooltipMapping.Rd man/setNodeWidthBypass.Rd man/setNodeWidthDefault.Rd man/setNodeWidthMapping.Rd man/setNotebookIsRunning.Rd man/setSandboxReinitialize.Rd man/setStyleDependencies.Rd man/setVisualPropertyDefault.Rd man/setVisualStyle.Rd man/spoofResponse-class.Rd man/syncNodeCustomGraphicsSize.Rd man/toggleGraphicsDetails.Rd man/ungroupAnnotation.Rd man/unhideAll.Rd man/unhideEdges.Rd man/unhideNodes.Rd man/uninstallApp.Rd man/updateAnnotationImage.Rd man/updateAnnotationShape.Rd man/updateAnnotationText.Rd man/updateApp.Rd man/updateGroupAnnotation.Rd man/updateNetworkInNDEx.Rd man/updateStyleDefaults.Rd man/updateStyleMapping.Rd tests/runTests.R vignettes/Cancer-networks-and-data.Rmd vignettes/Custom-Graphics.Rmd vignettes/Cytoscape-and-NDEx.Rmd vignettes/Cytoscape-and-graphNEL.Rmd vignettes/Cytoscape-and-iGraph.Rmd vignettes/Filtering-Networks.Rmd vignettes/Group-nodes.Rmd vignettes/Identifier-mapping.Rmd vignettes/Importing-data.Rmd vignettes/Jupyter-bridge-rcy3.Rmd vignettes/Network-functions-and-visualization.Rmd vignettes/Overview-of-RCy3.Rmd vignettes/Phylogenetic-trees.Rmd vignettes/Upgrading-existing-scripts.Rmd

cytoscape/RCy3 documentation built on April 7, 2024, 2:17 p.m.