API for daattali/ddpcr
Analysis and Visualization of Droplet Digital PCR in R and on the Web

Global functions
WELL_ID_REGEX Man page
\%>\% Man page
\%btwn\% Man page
analysis_complete Man page Source code
analyze Man page Source code
arrange_meta Source code
bind_df_ends Man page Source code
calc_negative_freq_simple Man page Source code
calculate_concentration Man page Source code
calculate_concentration_single Man page Source code
calculate_neg_freq_single Man page Source code
calculate_negative_freqs Man page Source code
capitalize Man page Source code
cat0 Man page Source code
check_step Man page Source code
classify_droplets Man page Source code
classify_droplets.pnpp_experiment Man page Source code
classify_droplets_single Man page Source code
classify_droplets_single.pnpp_experiment Man page Source code
classify_thresholds Man page Source code
cluster Man page Source code
cluster_name Man page Source code
clusters Man page Source code
col_to_num Man page Source code
custom_thresholds Man page
ddpcr Man page
ddpcr-package Man page
ddpcr_plate Man page
define_clusters Man page Source code
define_clusters.custom_thresholds Man page Source code
define_clusters.ddpcr_plate Man page Source code
define_clusters.pnpp_experiment Man page Source code
define_params Man page Source code
define_params.custom_thresholds Man page Source code
define_params.ddpcr_plate Man page Source code
define_params.fam_positive_pnpp Man page Source code
define_params.hex_positive_pnpp Man page Source code
define_params.pnpp_experiment Man page Source code
define_params.wildtype_mutant_pnpp Man page Source code
define_steps Man page Source code
define_steps.custom_thresholds Man page Source code
define_steps.ddpcr_plate Man page Source code
define_steps.pnpp_experiment Man page Source code
diff.point2d Man page Source code
empty_plate Source code
err_msg Man page Source code
fam_positive_pnpp Man page
find_data_files Source code
find_meta_file Source code
format.point2d Source code
get_col Man page Source code
get_consensus_name_from_data_files Source code
get_empty_cutoff Man page Source code
get_empty_cutoff.ddpcr_plate Man page Source code
get_empty_cutoff.pnpp_experiment Man page Source code
get_filled_border Man page Source code
get_filled_drops Man page Source code
get_name_from_data_file Source code
get_outlier_cutoff Man page Source code
get_outlier_cutoff.ddpcr_plate Man page Source code
get_row Man page Source code
get_single_well Man page Source code
get_well_from_data_file Source code
get_wells_btwn Man page Source code
has_signif_negative_cluster Man page Source code
has_step Man page Source code
hex_positive_pnpp Man page
init_data Source code
init_meta Source code
init_plate Source code
is_dir Man page Source code
is_dirty Man page Source code
is_empty_plate Man page Source code
is_file Man page Source code
is_range Man page Source code
is_well_success Man page Source code
is_well_success.ddpcr_plate Man page Source code
is_well_success.pnpp_experiment Man page Source code
launch Man page Source code
load_plate Man page Source code
local_maxima Man page Source code
local_minima Man page Source code
lol_to_df Man page Source code
mark_clusters Man page Source code
merge_dfs_overwrite_col Man page Source code
meta_var_name Man page Source code
move_back Man page Source code
move_front Man page Source code
msg Man page Source code
name Man page Source code
name<- Man page
named_vec_to_df Man page Source code
negative_name Man page Source code
negative_name<- Man page
nevercalled Source code
new_plate Man page Source code
next_step Man page Source code
normalize_to_rds Man page Source code
num_to_col Man page Source code
num_to_row Man page Source code
other_dim Man page Source code
params Man page Source code
params<- Man page
parent_plate_type Man page Source code
parent_plate_type.ddpcr_plate Man page Source code
parent_plate_type.default Man page Source code
parent_plate_type.fam_positive_pnpp Man page Source code
parent_plate_type.hex_positive_pnpp Man page Source code
parent_plate_type.wildtype_mutant_pnpp Man page Source code
pkg_globals_store Source code
plate_data Man page Source code
plate_data<- Man page
plate_meta Man page Source code
plate_meta<- Man page
plate_types Man page
plot.custom_thresholds Man page Source code
plot.ddpcr_plate Man page Source code
plot.pnpp_experiment Man page Source code
plot.wildtype_mutant_pnpp Man page Source code
pnpp_experiment Man page
point2d Man page Source code
positive_dim Man page Source code
positive_dim<- Man page
positive_dim_var Man page Source code
positive_name Man page Source code
positive_name<- Man page
print.ddpcr_plate Man page Source code
print.point2d Source code
quiet Man page Source code
range_list_to_vec Man page Source code
range_to_endpoints Man page Source code
range_to_seq Man page Source code
read_dir Source code
read_files Source code
read_plate Source code
reclassify_droplets Man page Source code
reclassify_droplets.pnpp_experiment Man page Source code
reclassify_droplets_single Man page Source code
reclassify_droplets_single.pnpp_experiment Man page Source code
remove_empty Man page Source code
remove_empty.ddpcr_plate Man page Source code
remove_empty.pnpp_experiment Man page Source code
remove_failures Man page Source code
remove_failures.ddpcr_plate Man page Source code
remove_outliers Man page Source code
remove_outliers.ddpcr_plate Man page Source code
reset Man page Source code
row_to_num Man page Source code
sample_data Man page
sample_data_dir Man page Source code
sample_data_file Man page Source code
sample_plate Man page Source code
sample_results_file Man page Source code
save_plate Man page Source code
set_default_clusters Source code
set_default_params Man page Source code
set_default_steps Source code
set_plate_type Source code
set_thresholds Man page Source code
setup_new_plate Source code
setup_plate Source code
status Man page Source code
status<- Man page
step Man page Source code
step_begin Man page Source code
step_end Man page Source code
step_name Man page Source code
steps Man page Source code
subset.ddpcr_plate Man page Source code
thresholds Man page Source code
thresholds<- Man page
type Man page Source code
unanalyzed_clusters Man page Source code
variable_dim Man page Source code
variable_dim<- Man page
variable_dim_var Man page Source code
warn_msg Man page Source code
well_info Man page Source code
wells_failed Man page Source code
wells_mutant Man page Source code
wells_negative Man page Source code
wells_positive Man page Source code
wells_success Man page Source code
wells_used Man page Source code
wells_wildtype Man page Source code
wildtype_mutant_pnpp Man page
x_threshold Man page Source code
x_threshold<- Man page
x_var Man page Source code
x_var<- Man page
y_threshold Man page Source code
y_threshold<- Man page
y_var Man page Source code
y_var<- Man page
daattali/ddpcr documentation built on June 25, 2017, 1:20 a.m.