API for daewoooo/primatR
What the Package Does (TODO)
| Global functions | |
|---|---|
| as.object | Source code |
| bam2GRanges | Man page Source code |
| bam2stat | Man page Source code |
| basesPerGenotypePerChr | Man page |
| collapseBins | Man page Source code |
| collapseOverlaps | Man page Source code |
| countProb | Man page Source code |
| countUniqueReadIDs | Man page Source code |
| coveragePerRegion | Man page Source code |
| cutISSreads | Man page Source code |
| estimateCN | Man page Source code |
| eventsPerChrSizeScatter | Man page |
| exportBedGraph | Man page Source code |
| exportBedGraphPairs | Source code |
| exportINVcalls | Man page Source code |
| fragments2UCSC | Man page Source code |
| genomewideRangesIdeo | Man page |
| genotypeRegions | Man page Source code |
| getCommonSubrangeSize | Man page Source code |
| getDisjointOverlaps | Man page Source code |
| getDisjointOverlapsWeighted | Man page Source code |
| getGenotype | Man page Source code |
| getHIContactCounts | Man page Source code |
| getMinDist | Man page Source code |
| getRangesOverlaps | Man page Source code |
| getReciprocalOverlaps | Man page Source code |
| getRegionBoundaries | Man page Source code |
| getSegDupOverlaps | Man page Source code |
| getTransChromFusions | Man page Source code |
| gr2grPercOverlap | Man page Source code |
| hotspotter | Man page Source code |
| importCalls | Man page Source code |
| importReadsFromComposite | Man page Source code |
| insertchr | Man page Source code |
| makeBins | Man page Source code |
| permDistanceToFeature | Man page Source code |
| plotAlignmentsPerRegion | Man page |
| plotColumnCounts | Man page Source code |
| plotColumnCountsPerChr | Man page |
| plotCompositeIdeo | Man page |
| plotDistanceTree | Man page Source code |
| plotHICcontactTable | Man page Source code |
| plotHICregional | Man page Source code |
| plotLinks | Man page Source code |
| plotNucmerCoords | Man page |
| plotOverlapWithRanges | Man page |
| plotReadPairCoverage | Man page |
| plotSSEQReadsPerRegion | Man page |
| plotVennPartitions | Man page |
| plotVennPartitionsGen | Man page |
| processReadLinks | Man page Source code |
| randomizeRanges | Man page Source code |
| range2rangeDistance | Man page Source code |
| ranges2UCSC | Man page Source code |
| rangesSizeDistribution | Man page |
| readPairsAsLinks | Man page Source code |
| recalcPercOverlap | Man page Source code |
| reformat | Man page Source code |
| removeRanges | Man page Source code |
| reportOverlapBases | Man page Source code |
| resizeRanges | Man page Source code |
| subtractRegions | Man page Source code |
| synchronizeReadDirRegion | Man page Source code |
| transCoord | Man page Source code |
