Files in daijiang/phyr
Model Based Phylogenetic Analysis

.Rbuildignore
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.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
.travis.yml
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/.Rapp.history
R/RcppExports.R R/cor_phylo.R R/data.R R/pcd.R R/pglmm-plot.R R/pglmm-utils.R R/pglmm.R R/pglmm_compare.R R/psv.R R/utils.R README.Rmd README.md
_pkgdown.yml
codecov.yml
cran-comments.md data-raw/DATASET.R
data/comm_a.rda
data/comm_b.rda
data/envi.rda
data/oldfield.rda
data/phylotree.rda
data/traits.rda
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docs/reference/align_comm_V.html
docs/reference/boot_ci.html
docs/reference/comm_a.html
docs/reference/comm_b.html
docs/reference/cor_phylo.html
docs/reference/envi.html
docs/reference/family.communityPGLMM.html
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docs/reference/fitted.communityPGLMM.html
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docs/reference/get_design_matrix_pglmm.html
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docs/reference/match_comm_tree.html
docs/reference/model.frame.communityPGLMM.html
docs/reference/nin.html
docs/reference/nobs.communityPGLMM.html
docs/reference/oldfield.html
docs/reference/pcd.html
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docs/reference/pglmm-matrix-structure.html
docs/reference/pglmm-plot-data.html
docs/reference/pglmm-plot-re.html
docs/reference/pglmm-predicted-values.html
docs/reference/pglmm-profile-LRT.html
docs/reference/pglmm.html
docs/reference/pglmm_compare.html
docs/reference/phylotree.html
docs/reference/plot_bayes.html
docs/reference/predict.communityPGLMM.html
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docs/reference/psd.html
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docs/reference/rm_site_noobs.html
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docs/reference/simulate.communityPGLMM.html
docs/reference/summary.communityPGLMM.html
docs/reference/summary.pglmm_compare.html
docs/reference/traits.html
docs/reference/vcv2.html
docs/sitemap.xml
inst/extra_data/comm_large.rds
inst/extra_data/phylotree_large.rds
man/.DS_Store
man/align_comm_V.Rd man/boot_ci.Rd man/comm_a.Rd man/comm_b.Rd man/cor_phylo.Rd man/envi.Rd man/family.communityPGLMM.Rd
man/figures/logo.png
man/fitted.communityPGLMM.Rd man/fixef.Rd man/get_design_matrix_pglmm.Rd man/match_comm_tree.Rd man/model.frame.communityPGLMM.Rd man/nin.Rd man/nobs.communityPGLMM.Rd man/oldfield.Rd man/pcd.Rd man/pcd_pred.Rd man/pglmm-matrix-structure.Rd man/pglmm-plot-data.Rd man/pglmm-plot-re.Rd man/pglmm-predicted-values.Rd man/pglmm-profile-LRT.Rd man/pglmm.Rd man/pglmm_compare.Rd man/phylotree.Rd man/plot_bayes.Rd man/predict.communityPGLMM.Rd man/prep_dat_pglmm.Rd man/print.communityPGLMM.Rd man/print.pglmm_compare.Rd man/psd.Rd man/ranef.Rd man/refit_boots.Rd man/residuals.communityPGLMM.Rd man/rm_site_noobs.Rd man/rm_sp_noobs.Rd man/simulate.communityPGLMM.Rd man/summary.communityPGLMM.Rd man/summary.pglmm_compare.Rd man/traits.Rd man/vcv2.Rd
phyr.Rproj
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pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/binaryPGLMM.cpp
src/cor_phylo.cpp
src/cor_phylo.h
src/pcd.cpp
src/pglmm_binary.cpp
src/pglmm_gaussian.cpp
src/psv.cpp
tests/testthat.R tests/testthat/test-cor_phylo.R tests/testthat/test-pcd.R tests/testthat/test-pglmm.R tests/testthat/test-pglmm_compare.R tests/testthat/test-psv.R tests/testthat/test-utils.R tests/testthat/test_pglmm_utils.R
vignettes/.gitignore
vignettes/_dev.Rmd vignettes/_profvis.Rmd vignettes/benchmarks.Rmd vignettes/pglmm.Rmd vignettes/phyr_example_empirical.Rmd vignettes/plot-re.Rmd
daijiang/phyr documentation built on Feb. 25, 2024, 3:01 a.m.