counts2viper: Variance stabilization transformation and noise addition for...

Description Usage Arguments Value

Description

This function stabilizes the variance, transform the data, and adds shot noise to prepare RNA-seq data for VIPER. This function is from Mariano's script; it was modified to use DESeq2, rather than DESeq, for VST.

Usage

1

Arguments

expr

A gene expression matrix, with genes as rows and samples as columns

Value

Expression matrix


danielderrick/defunctions documentation built on Aug. 4, 2017, 6:23 p.m.