writeSet: Write gene counts for genes in specified KEGG pathway to an...

Description Usage Arguments Value Examples

View source: R/gsea_functions.R

Description

Write gene counts for genes in specified KEGG pathway to an xlsx file.

Usage

1
writeSet(set, expr, filename = NULL)

Arguments

set

The name of the KEGG gene set to be plotted

expr

Gene expression matrix, with gene names as ENSEMBL ids

filename

The name of the output xlsx file.

Value

Writes xlsx file of counts to working directory.

Examples

1
writeSet("hsa04012 ErbB signaling pathway", expr, "ErbB_counts.xlsx")

danielderrick/defunctions documentation built on Aug. 4, 2017, 6:23 p.m.