Files in danlwarren/ENMTools
Analysis of Niche Evolution using Niche and Distribution Models
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
.travis.yml
DESCRIPTION
ENMTools.Rproj
MD5
NAMESPACE
NEWS.md
R/add.env.R
R/background.buffer.R
R/background.points.buffer.R
R/background.raster.buffer.R
R/background.shape.buffer.R
R/background.test.R
R/calc.B1.R
R/calc.B2.R
R/check.bg.R
R/check.clade.R
R/check.env.R
R/check.species.R
R/clamp.env.R
R/combine.species.R
R/drop.species.R
R/enmtools.aoc.R
R/enmtools.bc.R
R/enmtools.calibrate.R
R/enmtools.clade.R
R/enmtools.dm.R
R/enmtools.ecospat.bg.R
R/enmtools.ecospat.id.R
R/enmtools.gam.R
R/enmtools.glm.R
R/enmtools.hypervolume.R
R/enmtools.maxent.R
R/enmtools.rf.R
R/enmtools.rf.ranger.R
R/enmtools.species.R
R/enmtools.vip.R
R/env.breadth.R
R/env.evaluate.R
R/env.overlap.R
R/euro.worldclim.R
R/geog.range.overlap.R
R/hypervolume.overlap.R
R/iberolacerta.clade.R
R/identity.test.R
R/interactive.plot.R
R/interactive.plot.enmtools.model.R
R/interactive.plot.enmtools.species.R
R/marginal.plots.R
R/moses.list.R
R/multistack.pca.R
R/node.overlap.R
R/package.depends.R
R/point.overlap.R
R/rangebreak.blob.R
R/rangebreak.linear.R
R/rangebreak.ribbon.R
R/raster.breadth.R
R/raster.cor.R
R/raster.cor.matrix.R
R/raster.cor.plot.R
R/raster.overlap.R
R/raster.pca.R
R/raster.resid.R
R/raster.standardize.R
R/sim.points.R
R/species.from.file.R
R/sysdata.rda
R/threespace.plot.R
R/trimdupes.by.raster.R
R/utils.R
R/visualize.enm.R
R/visualize.overlap.R
R/zzz.R
Readme.html
Readme.md
Readme_files/figure-gfm/build_glms1-1.png
Readme_files/figure-gfm/build_glms2-1.png
Readme_files/figure-gfm/build_glms3-1.png
Readme_files/figure-gfm/build_ribbon-1.png
Readme_files/figure-gfm/collinearity2-1.png
Readme_files/figure-gfm/collinearity2-2.png
Readme_files/figure-gfm/ecospat_background-1.png
Readme_files/figure-gfm/ecospat_background-2.png
Readme_files/figure-gfm/ecospat_background2-1.png
Readme_files/figure-gfm/ecospat_background2-2.png
Readme_files/figure-gfm/ecospat_identity-1.png
Readme_files/figure-gfm/ecospat_identity-2.png
Readme_files/figure-gfm/enm_aoc-1.png
Readme_files/figure-gfm/enm_aoc-2.png
Readme_files/figure-gfm/env_overlap-1.png
Readme_files/figure-gfm/env_overlap-2.png
Readme_files/figure-gfm/env_overlap-3.png
Readme_files/figure-gfm/getdata-1.png
Readme_files/figure-gfm/interactive_plot-1.png
Readme_files/figure-gfm/point_aoc-1.png
Readme_files/figure-gfm/point_aoc-2.png
Readme_files/figure-gfm/range_aoc-1.png
Readme_files/figure-gfm/range_aoc-2.png
Readme_files/figure-gfm/rangebreak_blob-1.png
Readme_files/figure-gfm/rangebreak_linear-1.png
Readme_files/figure-gfm/rangebreak_linear-2.png
Readme_files/figure-gfm/rangebreak_ribbon-1.png
Readme_files/figure-gfm/rangebreak_ribbon-2.png
Readme_files/figure-gfm/rangebreak_ribbon-3.png
Readme_files/figure-gfm/rangebreak_ribbon-4.png
Readme_files/figure-gfm/rbl_reps-1.png
Readme_files/figure-gfm/rbl_reps-2.png
Readme_files/figure-gfm/read_tree-1.png
Readme_files/figure-gfm/response_plots-1.png
Readme_files/figure-gfm/response_plots-2.png
Readme_files/figure-gfm/response_plots-3.png
Readme_files/figure-gfm/subsetenv-1.png
Readme_files/figure-gfm/unnamed-chunk-3-1.png
Readme_files/figure-gfm/unnamed-chunk-5-1.png
Readme_files/figure-gfm/unnamed-chunk-7-1.png
Readme_files/figure-gfm/visualize.enm-1.png
Readme_files/figure-gfm/visualize.enm-2.png
data-raw/DATASET.R
inst/StarBEAST_MCC.species.txt
inst/monticola.csv
man/.Rapp.history
man/add.env.Rd
man/assert.extras.Rd
man/background.buffer.Rd
man/background.points.buffer.Rd
man/background.raster.buffer.Rd
man/background.shape.buffer.Rd
man/background.test.Rd
man/calc.B1.Rd
man/calc.B2.Rd
man/check.bg.Rd
man/check.clade.Rd
man/check.env.Rd
man/check.extras.Rd
man/check.species.Rd
man/clamp.env.Rd
man/combine.species.Rd
man/drop.species.Rd
man/enmtools.aoc.Rd
man/enmtools.bc.Rd
man/enmtools.calibrate.Rd
man/enmtools.clade.Rd
man/enmtools.dm.Rd
man/enmtools.ecospat.bg.Rd
man/enmtools.ecospat.id.Rd
man/enmtools.gam.Rd
man/enmtools.glm.Rd
man/enmtools.hypervolume.Rd
man/enmtools.maxent.Rd
man/enmtools.rf.Rd
man/enmtools.rf.ranger.Rd
man/enmtools.species.Rd
man/enmtools.vip.Rd
man/env.breadth.Rd
man/env.evaluate.Rd
man/env.overlap.Rd
man/euro.worldclim.Rd
man/figures/logo.png
man/find.extras.Rd
man/find.extras.missing.Rd
man/geog.range.overlap.Rd
man/hypervolume.overlap.Rd
man/iberolacerta.clade.Rd
man/identity.test.Rd
man/install.extras.Rd
man/interactive.plot.Rd
man/interactive.plot.enmtools.model.Rd
man/interactive.plot.enmtools.species.Rd
man/marginal.plots.Rd
man/moses.list.Rd
man/multistack.pca.Rd
man/node.overlap.Rd
man/point.overlap.Rd
man/rangebreak.blob.Rd
man/rangebreak.linear.Rd
man/rangebreak.ribbon.Rd
man/raster.breadth.Rd
man/raster.cor.Rd
man/raster.cor.matrix.Rd
man/raster.cor.plot.Rd
man/raster.overlap.Rd
man/raster.pca.Rd
man/raster.resid.Rd
man/raster.standardize.Rd
man/rasterToPoints2.Rd
man/sim.points.Rd
man/species.from.file.Rd
man/threespace.plot.Rd
man/trimdupes.by.raster.Rd
man/unwrap_list.Rd
man/visualize.enm.Rd
man/visualize.overlap.Rd
man/wrap_list.Rd
tests/testthat.R
tests/testthat/helper_make_species.R
tests/testthat/sysdata.rda
tests/testthat/test_ENMTools.R
vignettes/.gitignore
