Man pages for davetgerrard/GenomicLayers
Simple, sequence-based simulation of epi-genomes.
| createBindingFactor.DNA_consensus | Create a binding factor object to match a given DNA consensus |
| createBindingFactor.DNA_motif | Create a binding factor object to match a given DNA motif |
| createBindingFactor.DNA_regexp | Create a binding factor object to match a given pattern of... |
| createBindingFactor.layer_region | Create a binding factor object to match a given pattern of... |
| createLayerList.DNAstring | Create a LayerList object from a DNA sequence |
| createLayerSet.BSgenome | Create a genome-wide layerList object |
| createRandomBindingFactor | Randomly generate a binding factor |
| generateHitsCache | Generate a cache of binding factor within a LayerList |
| GSM1182890_d3.xist.mus.meanScores | Mean scores from mm9 chrX |
| keepBSgenomeSequences | Subset a BSgenome object |
| matchBindingFactor | Find matches for a binding factor on a layer set |
| matchBindingFactor.BSgenome | Find matches for a binding factor on a layer set containing a... |
| modifyLayerByBindingFactor.BSgenome | modifyLayerByBindingFactor.BSgenome |
| modifyLayerByBindingFactor.Views | Modify a layerSet object |
| plot.factorSet | Plot to visualise a set of binding factor profiles and mod... |
| print.bfSet | Formatted printing for a set of binding factors |
| runLayerBinding | Run the layer binding simulation |
| runLayerBinding.BSgenome | Run the layer binding simulation on a BSgenome object |
