Man pages for davetgerrard/GenomicLayers
Simple, sequence-based simulation of epi-genomes.

createBindingFactor.DNA_motifCreate a binding factor object to match a given DNA motif
createBindingFactor.DNA_regexpCreate a binding factor object to match a given pattern of...
createBindingFactor.layer_regionCreate a new biding factor
createLayerList.DNAstringCreate a LayerList object from a DNA sequence
createLayerSet.BSgenomeCreate a genome-wide layerList object
generateHitsCacheGenerate a cache of binding factor within a LayerList
GSM1182890_d3.xist.mus.meanScoresMean scores from mm9 chrX
matchBindingFactorFind matches for a binding factor on a layer set
matchBindingFactor.BSgenomeFind matches for a binding factor on a layer set containing a...
modifyLayerByBindingFactor.BSgenomemodifyLayerByBindingFactor.BSgenome
modifyLayerByBindingFactor.ViewsModify a layerSet object
print.bfSetFormatted printing for a set of binding factors
runLayerBindingRun the layer binding simulation
runLayerBinding.BSgenomeRun the layer binding simulation on a BSgenome object
davetgerrard/GenomicLayers documentation built on April 12, 2018, 8:27 p.m.