tcgsaseq
R packagevarseq()
function into varcompseq
(following trademark infringement notification from Golden Helix, Inc)tcgsaseq
in favor of the dearseq
Bioconductor packagetransform = TRUE
is now the defaultloc-lin
weights are now computed on unconditional (transformed) counts. They should be more robust this way to outlier genesvoom
-like weights$pvals
output are back to being the same regardless of the test
chosen being asympotic
or permutation
$pvals
output when which_test = permutations
preprocessed = FALSE
) in sp_weights
sp_weights
when facing NA
or NaN
valuesWARNING
instead of ERROR
when a gene set with no measured genes is testedNA
support through na.rm_...
logical argumentspreprocessed = FALSE
)varseq
and tcgsa_seq
wrapper functions, including
an option to compute heteroscedasticity weights without conditioning on the variable(s)
to be testedvarseq
for gene-wise testingAdd the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.