#' Calculates a set of Peaks
#'
#' Using the result of a pulldown_import, go through each protein and
#' calculate the peaks associated with each MHC.
#'
#' This should output the data frame of peaks for each protein along with
#' the meta data
#'
Identify_Peptide_Peaks <- function(input,
output_file='pulldown_peaks.csv',
method='PoT', param=NA,
min_peak_length=1, merge_peak_gap=2){
}
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