fillSampleTables: fillSampleTables

Description Usage Arguments Details Value Author(s)

Description

Fill multiple sequence tables in a MultiAmplicon object to include all or selected samples.

Usage

1
fillSampleTables(MA, samples = "union")

Arguments

MA

MultiAmplicon object

samples

either a character vector of length one giving "union" to use all samples appearing for any of the amplicons or a longer character vector giving names of samples to retain

Details

In a MultiAmplicon object for some primer pairs some samples might have no amplified sequence variants at all. This function adds a sequenceTableFilled slot to a MultiAmplicon object. It uses the sequenceTableNoChime slot and fills tables for all samples appearing in any table or for requested samples.

Value

MultiAmplicon object with the sequenceTableFilled slot filled

Author(s)

Emanuel Heitlinger


derele/MultiAmplicon documentation built on May 15, 2019, 5:04 a.m.