manipulate <- function(raw) {
raw$grouping <- makeGroups(raw, "fertilized")
# remove crown surface area, was calculated from crown width and length
raw$a.cs <- NULL
# h.c was defined as crown length, should be height to base of crown
raw$h.c <- with(raw, h.t - h.c)
# zero m.rt indicates it was not measured
raw$m.rt[raw$m.rt == 0] <- NA
raw
}
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