Files in dirkschumacher/surveillance-fork
Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena

.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
R/AllClass.R R/AllGeneric.R R/LRCUSUM.runlength.R R/algo_bayes.R R/algo_call.R R/algo_cdc.R R/algo_cusum.R R/algo_farrington.R R/algo_glrnb.R R/algo_glrpois.R R/algo_hhh.R R/algo_hmm.R R/algo_outbreakP.R R/algo_rki.R R/algo_rogerson.R R/algo_twins.R R/backprojNP.R R/catCUSUM.R R/checkDerivatives.R R/earsC.R R/farringtonFlexible.r R/gpc.poly-methods.R R/graphs.R R/hhh4.R R/hhh4_W.R R/hhh4_W_powerlaw.R R/hhh4_methods.R R/hhh4_oneStepAhead.R R/hhh4_plot.R R/hhh4_simulate.R R/intersectPolyCircle.R R/isoWeekYear.R R/ks.plot.unif.R R/linelist2sts.R R/misc_dataProcessing.R R/modifyListcall.R R/newtonRaphson.R R/nowcast.R R/options.R R/pairedbinCUSUM.R R/permutationTest.R R/pit.R R/plot_graphics.R R/plot_multi.R R/plot_xtable.R R/qlomax.R R/scores.R R/sim_HHH.R R/sim_background.R R/sim_pointSource.R R/spatial_tools.R R/stcd.R R/sts.R R/stsBP.R
R/sysdata.rda
R/testcalls.R R/twinSIR.R R/twinSIR_epidata.R R/twinSIR_helper.R R/twinSIR_intensity.R R/twinSIR_methods.R R/twinSIR_simulation.R R/twinstim.R R/twinstim_epidata.R R/twinstim_epidata_methods.R R/twinstim_glm.R R/twinstim_helper.R R/twinstim_methods.R R/twinstim_siaf.R R/twinstim_siaf_gaussian.R R/twinstim_siaf_powerlaw.R R/twinstim_siaf_powerlawL.R R/twinstim_siaf_step.R R/twinstim_siaf_student.R R/twinstim_simulation.R R/twinstim_step.R R/twinstim_tiaf.R R/untie.R R/wrap_univariate.R R/zzz.R README.md
data/MMRcoverageDE.RData
data/abattoir.RData
data/deleval.RData
data/fluBYBW.RData
data/foodata.RData
data/fooepidata.RData
data/foofit.RData
data/h1_nrwrp.RData
data/ha.RData
data/ha.sts.RData
data/hagelloch.RData
data/hepatitisA.RData
data/imdepi.RData
data/imdepifit.RData
data/influMen.RData
data/k1.RData
data/m1.RData
data/m2.RData
data/m3.RData
data/m4.RData
data/m5.RData
data/measles.weser.RData
data/measlesDE.RData
data/measlesWeserEms.RData
data/meningo.age.RData
data/momo.RData
data/n1.RData
data/n2.RData
data/q1_nrwh.RData
data/q2.RData
data/s1.RData
data/s2.RData
data/s3.RData
data/salmonella.agona.RData
data/shadar.RData
demo/00Index
demo/biosurvbook.R demo/cost.R develop/S4package.R develop/algo_bayes.R
develop/algo_hmm-recursive.Rnw
develop/algo_hmm.Rnw
develop/class.R develop/convertSTS.R develop/data.R develop/fluBYBWdata-fix.R develop/fluBYBWmap-fix.R develop/gis.R
develop/glrnbFarrington.Rd
develop/glrnbFarrington.r
develop/hepAmale.txt
develop/hmm.R develop/junchoi.R develop/kenettpollack83.R develop/mvpois.R develop/n4.R develop/niceplot.R
develop/polio.asc
develop/rogerson_yamada2004.R develop/simHHH.R
develop/simHHH.RData
develop/spatial.R develop/stcd_kill.R
develop/stcd_kill.Rout
inst/CITATION
inst/NEWS.Rd
inst/extdata/counts_flu_BYBW.txt
inst/extdata/h1_nrwrp.txt
inst/extdata/k1.txt
inst/extdata/m1.txt
inst/extdata/m2.txt
inst/extdata/m3.txt
inst/extdata/m4.txt
inst/extdata/m5.txt
inst/extdata/n1.txt
inst/extdata/n2.txt
inst/extdata/neighbourhood_BYBW.txt
inst/extdata/population_2001-12-31_BYBW.txt
inst/extdata/q1_nrwh.txt
inst/extdata/q2.txt
inst/extdata/s1.txt
inst/extdata/s2.txt
inst/extdata/s3.txt
inst/extdata/salmonella.agona.txt
inst/shapes/berlin.dbf
inst/shapes/berlin.sbn
inst/shapes/berlin.sbx
inst/shapes/berlin.shp
inst/shapes/berlin.shx
inst/shapes/districtsD.RData
inst/shapes/districts_BYBW.dbf
inst/shapes/districts_BYBW.shp
inst/shapes/districts_BYBW.shx
inst/unitTests/Makefile
inst/unitTests/runit_algoglrnb.R man/LRCUSUM.runlength.Rd man/MMRcoverageDE.Rd man/R0.Rd man/abattoir.Rd man/addSeason2formula.Rd man/aggregate.disProg.Rd man/algo.bayes.Rd man/algo.call.Rd man/algo.cdc.Rd man/algo.compare.Rd man/algo.cusum.Rd man/algo.farrington.Rd man/algo.farrington.assign.weights.Rd man/algo.farrington.fitGLM.Rd man/algo.farrington.threshold.Rd man/algo.glrnb.Rd man/algo.glrpois.Rd man/algo.hhh.Rd man/algo.hhh.grid.Rd man/algo.hmm.Rd man/algo.outbreakP.Rd man/algo.quality.Rd man/algo.rki.Rd man/algo.rogerson.Rd man/algo.summary.Rd man/algo.twins.Rd man/animate.Rd man/anscombe.residuals.Rd man/arlCusum.Rd man/backprojNP.Rd man/bestCombination.Rd man/categoricalCUSUM.Rd man/checkResidualProcess.Rd man/compMatrix.writeTable.Rd man/correct53to52.Rd man/create.disProg.Rd man/create.grid.Rd man/deleval.Rd man/disProg2sts.Rd man/discpoly.Rd man/earsC.Rd man/enlargeData.Rd man/estimateGLRNbHook.Rd man/estimateGLRPoisHook.Rd man/farringtonFlexible.Rd man/find.kh.Rd man/findH.Rd man/findK.Rd man/fluBYBW.Rd man/formatPval.Rd man/ha.Rd man/hagelloch.Rd man/hepatitisA.Rd man/hhh4.Rd man/hhh4_W_powerlaw.Rd man/hhh4_formula.Rd man/hhh4_methods.Rd man/hhh4_plot.Rd man/hhh4_predict.Rd man/hhh4_simulate.Rd man/hhh4_validation.Rd man/imdepi.Rd man/influMen.Rd man/inside.gpc.poly.Rd man/intensityplot.Rd man/intersectPolyCircle.Rd man/isScalar.Rd man/isoWeekYear.Rd man/ks.plot.unif.Rd man/linelist2sts.Rd man/loglikelihood.Rd man/m1.Rd man/magic.dim.Rd man/make.design.Rd man/makePlot.Rd man/meanResponse.Rd man/measles.weser.Rd man/measlesDE.Rd man/meningo.age.rd man/momo.Rd man/multiplicity.Rd man/nbOrder.Rd man/nowcast.Rd man/pairedbinCUSUM.Rd man/plot.atwins.Rd man/plot.disProg.Rd man/plot.survRes.Rd man/poly2adjmat.Rd man/polyAtBorder.Rd man/predict.ah.Rd man/primeFactors.Rd man/print.algoQV.Rd man/qlomax.Rd man/readData.Rd man/refvalIdxByDate.Rd man/residuals.ah.Rd man/residualsCT.Rd man/runifdisc.Rd man/salmonella.agona.Rd man/scale.gpc.poly.Rd man/shadar.Rd man/sim.pointSource.Rd man/sim.seasonalNoise.Rd man/simHHH.Rd man/stcd.Rd man/sts-class.Rd man/stsAggregate.Rd man/stsBP-class.Rd man/stsDisp.Rd man/stsSlots.Rd man/stsXtrct.Rd man/sumNeighbours.Rd man/surveillance-package.Rd man/surveillance.options.Rd man/test.Rd man/testSim.Rd man/toFileDisProg.Rd man/twinSIR.Rd man/twinSIR_cox.Rd man/twinSIR_epidata.Rd man/twinSIR_epidata_animate.Rd man/twinSIR_epidata_intersperse.Rd man/twinSIR_epidata_plot.Rd man/twinSIR_epidata_summary.Rd man/twinSIR_exData.Rd man/twinSIR_intensityplot.Rd man/twinSIR_methods.Rd man/twinSIR_profile.Rd man/twinSIR_simulation.Rd man/twinstim.Rd man/twinstim_epidataCS.Rd man/twinstim_epidataCS_aggregate.Rd man/twinstim_epidataCS_animate.Rd man/twinstim_epidataCS_plot.Rd man/twinstim_epidataCS_update.Rd man/twinstim_iaf.Rd man/twinstim_iafplot.Rd man/twinstim_intensityplot.Rd man/twinstim_methods.Rd man/twinstim_plot.Rd man/twinstim_profile.Rd man/twinstim_siaf.Rd man/twinstim_simulation.Rd man/twinstim_step.Rd man/twinstim_tiaf.Rd man/twinstim_update.Rd man/unionSpatialPolygons.Rd man/untie.Rd man/wrap.algo.Rd man/xtable.algoQV.Rd man/zetaweights.Rd
newsim/sim_infepi.Rnw
src/Makevars
src/Makevars.win
src/MyMakefile
src/backproj.cc
src/gsl_wrappers.h
src/ks.c
src/stcd-assuncaocorrea.cc
src/stcd-assuncaocorrea.h
src/surveillance.c
src/twins.cc
sysdata/CIdata.Rd
sysdata/CIdata.txt
sysdata/hypGeomSmall.txt
sysdata/sysdata.R tests/createSTS-objects.R tests/doRUnit.R
tests/flu_ByBw.txt
tests/neighourhood_ByBw.txt
tests/population_2001-12-31_ByBw.txt
tests/test-nbOrder.R tests/test-siafs.R
vignettes/.install_extras
vignettes/glrnb.Rnw
vignettes/hhh4-cache.RData
vignettes/hhh4.Rnw
vignettes/references.bib
vignettes/surveillance-cache.RData
vignettes/surveillance.Rnw
dirkschumacher/surveillance-fork documentation built on May 13, 2017, 2:25 a.m.