README.md

In dkidney/gibbonsecr: SECR Analysis for Acoustic Gibbon Surveys

gibbonsecr

gibbonsecr provides tools for analysing data from acoustic gibbon surveys using Spatially Explicit Capture-Recapture (SECR).

Click here view the online manual.

Click here to download the PDF manual.

Installation

gibbonsecr is not available on CRAN and needs to be installed directly from Github.

Prerequisites

Mac:

Install XQuartz: https://www.xquartz.org/

Install Xcode: https://developer.apple.com/xcode/

Windows:

Install Rtools: https://cran.r-project.org/bin/windows/Rtools/

Install R

Mac:

https://cran.r-project.org/bin/macosx/

Windows:

https://cran.r-project.org/bin/windows/base/

Install devtools

From the R console:

install.packages("devtools")

Install gibbonsecr

From the R console:

# release version
devtools::install_github("dkidney/gibbonsecr")

# development version
devtools::install_github("dkidney/gibbonsecr", ref = "develop")

Launch

library(gibbonsecr)
gui()

Bug reports

Please report any bugs on the issues page:

https://github.com/dkidney/gibbonsecr/issues

Future developments

gibbonsecr is only being minimally maintained, but efforts will be made to fix bugs and maintain the existing funtionalilty.

For access to more general SECR methods for acoustic data, please see the following:

• The ascr graphical user interface: https://github.com/cmjt/ascr_shiny
• The ascr R package: https://github.com/b-steve/ascr

The asec package is being actively maintained and offers a broader range of tools for analysing acoustic spatial capture-recapture data.

dkidney/gibbonsecr documentation built on May 15, 2019, 9:11 a.m.