Files in donaldRwilliams/BGGM
Bayesian Gaussian Graphical Models

.Rbuildignore
.gitattributes
.github/workflows/build.yml
.gitignore
.travis.yml
BGGM.Rproj
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/BGGM-package.R R/RcppExports.R R/bggm_missing.R R/bma_posterior.R R/coef.estimate.R R/confirm.R R/constrained_post.R R/convergence.R R/datasets.R R/estimate.R R/explore.default.R R/fisher_r2z.R R/fisher_z2r.R R/gen_ordinal.R R/gen_pcors.R R/ggm_compare_bf.default.R R/ggm_compare_confirm.R R/ggm_compare_estimate.default.R R/ggm_compare_ppc.default.R R/ggm_search.R R/helpers.R R/map.R R/mvn_imputation.R R/pcor_2_cor.BGGM.R R/pcor_mat.R R/plot.select.R R/plot_prior.R R/posterior_predict.R R/posterior_samples.R R/posterior_sum.R R/precision.R R/pred_prob.R R/predict.estimate.R R/predictability.R R/print_BGGM.R R/prior_belief_ggm.R R/prior_belief_var.R R/regression_summary.R R/roll_your_own.R R/select.VAR_estimate.R R/select.estimate.R R/select.explore.R R/select.ggm_compare_bf.R R/select.ggm_compare_estimate.R R/var_estimate.R R/weighted_adj_mat.R R/zero_order.R README.Rmd README.md
_pkgdown.yml
cleanup
config.status
configure
configure.ac
cran-comments.md data-raw/bfi_data.R data-raw/csws_data.R data-raw/ptsd_cor1.R data-raw/ptsd_cor2.R data-raw/ptsd_cor3.R data-raw/ptsd_cor4.R data-raw/ptsd_data.R
data/Sachs.rda
data/asd_ocd.rda
data/bfi.rda
data/csws.rda
data/depression_anxiety_t1.rda
data/depression_anxiety_t2.rda
data/gss.rda
data/ifit.rda
data/iri.rda
data/ptsd.csv
data/ptsd.rda
data/ptsd_cor1.csv
data/ptsd_cor1.rda
data/ptsd_cor2.rda
data/ptsd_cor3.rda
data/ptsd_cor4.rda
data/rsa.rda
data/tas.rda
data/women_math.rda
docs/404.html
docs/LICENSE-text.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/control.html
docs/articles/hyp_3_ways.html
docs/articles/in_tandem.html
docs/articles/index.html
docs/articles/installation.html
docs/articles/installation_files/figure-html/pressure-1.png
docs/articles/mcmc_diagnostics.html
docs/articles/netplot.html
docs/articles/netplot_2.png
docs/articles/netstat_custom.html
docs/articles/netstat_custom_files/figure-html/unnamed-chunk-10-1.png
docs/articles/netstat_custom_files/figure-html/unnamed-chunk-13-1.png
docs/articles/netstat_custom_files/figure-html/unnamed-chunk-16-1.png
docs/articles/ppc_custom.html
docs/articles/ppc_custom_files/figure-html/unnamed-chunk-13-1.png
docs/articles/ppc_custom_files/figure-html/unnamed-chunk-18-1.png
docs/articles/ppc_custom_files/figure-html/unnamed-chunk-23-1.png
docs/articles/ppc_custom_files/figure-html/unnamed-chunk-28-1.png
docs/articles/ppc_custom_files/figure-html/unnamed-chunk-7-1.png
docs/articles/ppc_custom_files/figure-html/unnamed-chunk-8-1.png
docs/articles/predictability.html
docs/articles/test_sum.html
docs/articles/test_vig.html
docs/articles/var_model.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/man/figures/acf.png
docs/man/figures/acf_new2.png
docs/man/figures/acf_problem.png
docs/man/figures/binary_r2_error.png
docs/man/figures/binary_r2_ridge.png
docs/man/figures/est_net.png
docs/man/figures/hyp_3ways_hist.png
docs/man/figures/hyp_3ways_pie.png
docs/man/figures/hyp_3ways_ppc.png
docs/man/figures/hyp_plot.png
docs/man/figures/netplot_1.png
docs/man/figures/netplot_2.png
docs/man/figures/netplot_3.png
docs/man/figures/netstat_assort.png
docs/man/figures/netstat_bridge.png
docs/man/figures/netstat_ridge.png
docs/man/figures/ordinal_r2_error.png
docs/man/figures/test_sum_hist.png
docs/man/figures/trace.png
docs/man/figures/var_coef.png
docs/man/figures/var_ridgeline.png
docs/news/index.html
docs/paper.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/BGGM-package.html
docs/reference/Sachs.html
docs/reference/VAR_estimate.html
docs/reference/asd_ocd.html
docs/reference/bfi.html
docs/reference/bggm_missing-1.png
docs/reference/bggm_missing.html
docs/reference/coef.estimate.html
docs/reference/coef.explore.html
docs/reference/confirm.html
docs/reference/convergence-1.png
docs/reference/convergence-10.png
docs/reference/convergence-11.png
docs/reference/convergence-12.png
docs/reference/convergence-2.png
docs/reference/convergence-3.png
docs/reference/convergence-4.png
docs/reference/convergence-5.png
docs/reference/convergence-6.png
docs/reference/convergence-7.png
docs/reference/convergence-8.png
docs/reference/convergence-9.png
docs/reference/convergence.html
docs/reference/csws.html
docs/reference/depression_anxiety_t1.html
docs/reference/depression_anxiety_t2.html
docs/reference/estimate-1.png
docs/reference/estimate-10.png
docs/reference/estimate-11.png
docs/reference/estimate-12.png
docs/reference/estimate-13.png
docs/reference/estimate-14.png
docs/reference/estimate-2.png
docs/reference/estimate-3.png
docs/reference/estimate-4.png
docs/reference/estimate-5.png
docs/reference/estimate-6.png
docs/reference/estimate-7.png
docs/reference/estimate-8.png
docs/reference/estimate-9.png
docs/reference/estimate.html
docs/reference/explore-1.png
docs/reference/explore-10.png
docs/reference/explore-11.png
docs/reference/explore-12.png
docs/reference/explore-13.png
docs/reference/explore-14.png
docs/reference/explore-15.png
docs/reference/explore-16.png
docs/reference/explore-17.png
docs/reference/explore-18.png
docs/reference/explore-19.png
docs/reference/explore-2.png
docs/reference/explore-20.png
docs/reference/explore-21.png
docs/reference/explore-22.png
docs/reference/explore-23.png
docs/reference/explore-24.png
docs/reference/explore-3.png
docs/reference/explore-4.png
docs/reference/explore-5.png
docs/reference/explore-6.png
docs/reference/explore-7.png
docs/reference/explore-8.png
docs/reference/explore-9.png
docs/reference/explore.html
docs/reference/figures/README-example-1.png
docs/reference/figures/README-unnamed-chunk-10-1.png
docs/reference/figures/README-unnamed-chunk-12-1.png
docs/reference/figures/README-unnamed-chunk-13-1.png
docs/reference/figures/README-unnamed-chunk-15-1.png
docs/reference/figures/README-unnamed-chunk-16-1.png
docs/reference/figures/README-unnamed-chunk-17-1.png
docs/reference/figures/README-unnamed-chunk-18-1.png
docs/reference/figures/README-unnamed-chunk-19-1.png
docs/reference/figures/README-unnamed-chunk-2-1.png
docs/reference/figures/README-unnamed-chunk-20-1.png
docs/reference/figures/README-unnamed-chunk-21-1.png
docs/reference/figures/README-unnamed-chunk-22-1.png
docs/reference/figures/README-unnamed-chunk-23-1.png
docs/reference/figures/README-unnamed-chunk-24-1.png
docs/reference/figures/README-unnamed-chunk-25-1.png
docs/reference/figures/README-unnamed-chunk-26-1.png
docs/reference/figures/README-unnamed-chunk-27-1.png
docs/reference/figures/README-unnamed-chunk-29-1.png
docs/reference/figures/README-unnamed-chunk-29-2.png
docs/reference/figures/README-unnamed-chunk-29-3.png
docs/reference/figures/README-unnamed-chunk-3-1.png
docs/reference/figures/README-unnamed-chunk-30-1.png
docs/reference/figures/README-unnamed-chunk-31-1.png
docs/reference/figures/README-unnamed-chunk-32-1.png
docs/reference/figures/README-unnamed-chunk-33-1.png
docs/reference/figures/README-unnamed-chunk-35-1.png
docs/reference/figures/README-unnamed-chunk-37-1.png
docs/reference/figures/README-unnamed-chunk-38-1.png
docs/reference/figures/README-unnamed-chunk-4-1.png
docs/reference/figures/README-unnamed-chunk-5-1.png
docs/reference/figures/README-unnamed-chunk-6-1.png
docs/reference/figures/README-unnamed-chunk-7-1.png
docs/reference/figures/README-unnamed-chunk-9-1.png
docs/reference/figures/README-unnamed-chunk-9-2.png
docs/reference/figures/acf.png
docs/reference/figures/acf_new.png
docs/reference/figures/acf_new2.png
docs/reference/figures/acf_problem.png
docs/reference/figures/binary_r2_error.png
docs/reference/figures/binary_r2_ridge.png
docs/reference/figures/est_net.png
docs/reference/figures/hex - Copy.png
docs/reference/figures/hex.jpg
docs/reference/figures/hex.png
docs/reference/figures/hyp_3ways_hist.png
docs/reference/figures/hyp_3ways_pie.png
docs/reference/figures/hyp_3ways_ppc.png
docs/reference/figures/hyp_plot.png
docs/reference/figures/index_hist.png
docs/reference/figures/index_summ.png
docs/reference/figures/logo.jpg
docs/reference/figures/logo.pdf
docs/reference/figures/logo.png
docs/reference/figures/logo2.jpg
docs/reference/figures/netplot_1.png
docs/reference/figures/netplot_2.png
docs/reference/figures/netplot_3.png
docs/reference/figures/netplot_index.png
docs/reference/figures/netstat_assort.png
docs/reference/figures/netstat_bridge.png
docs/reference/figures/netstat_ridge.png
docs/reference/figures/ordinal_r2_error.png
docs/reference/figures/test_sum_hist.png
docs/reference/figures/trace.png
docs/reference/figures/var_coef.png
docs/reference/figures/var_ridgeline.png
docs/reference/fisher_r_to_z.html
docs/reference/fisher_z_to_r.html
docs/reference/gen_ordinal.html
docs/reference/ggm_compare_confirm.html
docs/reference/ggm_compare_estimate-1.png
docs/reference/ggm_compare_estimate-2.png
docs/reference/ggm_compare_estimate-3.png
docs/reference/ggm_compare_estimate-4.png
docs/reference/ggm_compare_estimate-5.png
docs/reference/ggm_compare_estimate-6.png
docs/reference/ggm_compare_estimate.html
docs/reference/ggm_compare_explore-1.png
docs/reference/ggm_compare_explore-2.png
docs/reference/ggm_compare_explore-3.png
docs/reference/ggm_compare_explore.html
docs/reference/ggm_compare_ppc-1.png
docs/reference/ggm_compare_ppc-2.png
docs/reference/ggm_compare_ppc-3.png
docs/reference/ggm_compare_ppc-4.png
docs/reference/ggm_compare_ppc-5.png
docs/reference/ggm_compare_ppc.html
docs/reference/gss.html
docs/reference/ifit.html
docs/reference/index.html
docs/reference/iri.html
docs/reference/map.html
docs/reference/mvn_imputation-1.png
docs/reference/mvn_imputation.html
docs/reference/pcor_mat.html
docs/reference/pcor_sum-1.png
docs/reference/pcor_sum.html
docs/reference/pcor_to_cor.html
docs/reference/plot.confirm-1.png
docs/reference/plot.confirm.html
docs/reference/plot.ggm_compare_ppc-1.png
docs/reference/plot.ggm_compare_ppc-2.png
docs/reference/plot.ggm_compare_ppc.html
docs/reference/plot.pcor_sum.html
docs/reference/plot.predictability-1.png
docs/reference/plot.predictability.html
docs/reference/plot.roll_your_own-1.png
docs/reference/plot.roll_your_own.html
docs/reference/plot.select.html
docs/reference/plot.summary.estimate-1.png
docs/reference/plot.summary.estimate.html
docs/reference/plot.summary.explore-1.png
docs/reference/plot.summary.explore.html
docs/reference/plot.summary.ggm_compare_estimate-1.png
docs/reference/plot.summary.ggm_compare_estimate.html
docs/reference/plot.summary.ggm_compare_explore-1.png
docs/reference/plot.summary.ggm_compare_explore.html
docs/reference/plot.summary.select.explore-1.png
docs/reference/plot.summary.select.explore.html
docs/reference/plot.summary.var_estimate-1.png
docs/reference/plot.summary.var_estimate.html
docs/reference/plot_prior-1.png
docs/reference/plot_prior.html
docs/reference/posterior_samples-1.png
docs/reference/posterior_samples.html
docs/reference/predict.estimate.html
docs/reference/predict.explore.html
docs/reference/predict.var_estimate.html
docs/reference/predictability-1.png
docs/reference/predictability.html
docs/reference/print.BGGM.html
docs/reference/ptsd.html
docs/reference/ptsd_cor1.html
docs/reference/ptsd_cor2.html
docs/reference/ptsd_cor3.html
docs/reference/ptsd_cor4.html
docs/reference/regression_summary.html
docs/reference/roll_your_own-1.png
docs/reference/roll_your_own-2.png
docs/reference/roll_your_own-3.png
docs/reference/roll_your_own.html
docs/reference/rsa.html
docs/reference/select.VAR_estimate.html
docs/reference/select.estimate.html
docs/reference/select.explore.html
docs/reference/select.ggm_compare_estimate.html
docs/reference/select.ggm_compare_explore.html
docs/reference/select.html
docs/reference/select.var_estimate-1.png
docs/reference/summary.coef.html
docs/reference/summary.estimate.html
docs/reference/summary.explore.html
docs/reference/summary.ggm_compare_estimate.html
docs/reference/summary.ggm_compare_explore.html
docs/reference/summary.predictability.html
docs/reference/summary.select.explore.html
docs/reference/summary.var_estimate.html
docs/reference/tas.html
docs/reference/weighted_adj_mat.html
docs/reference/women_math.html
docs/reference/zero_order_cors.html
docs/sitemap.xml
index.Rmd index.md
inst/CITATION
inst/REFERENCES.bib
man/BGGM-package.Rd man/Sachs.Rd man/asd_ocd.Rd man/bfi.Rd man/bggm_missing.Rd man/coef.estimate.Rd man/coef.explore.Rd man/confirm.Rd man/constrained_posterior.Rd man/convergence.Rd man/csws.Rd man/depression_anxiety_t1.Rd man/depression_anxiety_t2.Rd man/estimate.Rd man/explore.Rd
man/figures/acf.png
man/figures/acf_new.png
man/figures/acf_new2.png
man/figures/acf_problem.png
man/figures/binary_r2_error.png
man/figures/binary_r2_ridge.png
man/figures/est_net.png
man/figures/hyp_3ways_hist.png
man/figures/hyp_3ways_pie.png
man/figures/hyp_3ways_ppc.png
man/figures/hyp_plot.png
man/figures/index_hist.png
man/figures/index_summ.png
man/figures/logo.png
man/figures/netplot_1.png
man/figures/netplot_2.png
man/figures/netplot_3.png
man/figures/netplot_index.png
man/figures/netstat_assort.png
man/figures/netstat_bridge.png
man/figures/netstat_ridge.png
man/figures/ordinal_r2_error.png
man/figures/test_sum_hist.png
man/figures/trace.png
man/figures/var_coef.png
man/figures/var_ridgeline.png
man/fisher_r_to_z.Rd man/fisher_z_to_r.Rd man/gen_net.Rd man/gen_ordinal.Rd man/ggm_compare_confirm.Rd man/ggm_compare_estimate.Rd man/ggm_compare_explore.Rd man/ggm_compare_ppc.Rd man/gss.Rd man/ifit.Rd man/impute_data.Rd man/iri.Rd man/map.Rd man/pcor_mat.Rd man/pcor_sum.Rd man/pcor_to_cor.Rd man/plot.confirm.Rd man/plot.ggm_compare_ppc.Rd man/plot.pcor_sum.Rd man/plot.predictability.Rd man/plot.roll_your_own.Rd man/plot.select.Rd man/plot.summary.estimate.Rd man/plot.summary.explore.Rd man/plot.summary.ggm_compare_estimate.Rd man/plot.summary.ggm_compare_explore.Rd man/plot.summary.select.explore.Rd man/plot.summary.var_estimate.Rd man/plot_prior.Rd man/posterior_predict.Rd man/posterior_samples.Rd man/precision.Rd man/predict.estimate.Rd man/predict.explore.Rd man/predict.var_estimate.Rd man/predictability.Rd man/predicted_probability.Rd man/print.BGGM.Rd man/prior_belief_ggm.Rd man/prior_belief_var.Rd man/ptsd.Rd man/ptsd_cor1.Rd man/ptsd_cor2.Rd man/ptsd_cor3.Rd man/ptsd_cor4.Rd man/regression_summary.Rd man/roll_your_own.Rd man/rsa.Rd man/select.Rd man/select.estimate.Rd man/select.explore.Rd man/select.ggm_compare_estimate.Rd man/select.ggm_compare_explore.Rd man/select.var_estimate.Rd man/summary.coef.Rd man/summary.estimate.Rd man/summary.explore.Rd man/summary.ggm_compare_estimate.Rd man/summary.ggm_compare_explore.Rd man/summary.predictability.Rd man/summary.select.explore.Rd man/summary.var_estimate.Rd man/tas.Rd man/var_estimate.Rd man/weighted_adj_mat.Rd man/women_math.Rd man/zero_order_cors.Rd paper.md
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
readme_models/binary_cors.rda
readme_models/bridge.png
readme_models/confirm_hyp.png
readme_models/fit_explore.rda
readme_models/fit_ggm_compare_confirm.rda
readme_models/fit_hyp1.rda
readme_models/fit_mvn_ordinal.rda
readme_models/fit_plt_ex.rda
readme_models/fit_ppc1.rda
readme_models/fit_sample.rda
readme_models/ggm_compare_estimate.png
readme_models/global_hd.rda
readme_models/hex.jpg
readme_models/mv_probit.rda
readme_models/obs.rda
readme_models/pcor_ex.rda
readme_models/plt_est_net.png
readme_models/plt_ggm_compare_explore.png
readme_models/plt_net_example.png
readme_models/ppc_1.png
readme_models/predictability.png
src/Makevars.in
src/Makevars.win
src/RcppExports.cpp
src/bggm_fast.cpp
tests/testthat.R tests/testthat/test-estimate.R tests/testthat/test-summary.estimate.R
vignettes/.gitignore
vignettes/control.Rmd vignettes/hyp_3_ways.Rmd vignettes/in_tandem.Rmd vignettes/installation.Rmd vignettes/mcmc_diagnostics.Rmd vignettes/netplot.Rmd vignettes/netstat_custom.Rmd
vignettes/netstat_fit.rda
vignettes/ppc_custom.Rmd vignettes/predictability.Rmd vignettes/test_sum.Rmd vignettes/var_model.Rmd
donaldRwilliams/BGGM documentation built on April 17, 2024, 5:52 p.m.