README.md

In dosorio/ex2flux: Convert Gene EXPression Data to FBA FLUXes

exp2flux : convert gene EXPression data TO FBA FLUX bounds.

The exp2flux package was designed as a tool to convert EXPression data TO FBA FLUX bounds.

Install:

This package required R version 2.10 or higher. If you are using an older version of R you will be prompted to upgrade when you try to install the package.

For install the latest stable version this package directly from GitHub:

# Install 'devtools' R package
install.packages("devtools")

# Install 'minval' package
devtools::install_github("gibbslab/exp2flux")
library("exp2flux")

Available functions:

|Function | Description | |:--------|:------------| |exp2flux|Convert Gene Expression Data to FBA flux bounds| |fluxDifferences|Report the fold change of fluxes between two models| |plotDifferences|Plot the fold change of fluxes between two models into a bipartite graph|

Citation

Daniel Osorio, Kelly Botero, Janneth Gonzalez and Andres Pinzon-Velasco (2016). exp2flux: convert EXPression data to FBA FLUXes. R package version 0.1.

dosorio/ex2flux documentation built on May 15, 2019, 10:42 a.m.