API for drisso/SingleCellExperiment
S4 Classes for Single Cell Data

Global functions
$,LinearEmbeddingMatrix-method Man page
$<-,LinearEmbeddingMatrix-method Man page
GET_FUN Source code
LinearEmbeddingMatrix Man page Source code
LinearEmbeddingMatrix-class Man page
SET_FUN Source code
SingleCellExperiment Man page Source code
SingleCellExperiment-class Man page
[,LinearEmbeddingMatrix,ANY,ANY,ANY-method Man page
[,LinearEmbeddingMatrix,ANY,ANY-method Man page
[,LinearEmbeddingMatrix,ANY-method Man page
[,SingleCellExperiment,ANY,ANY,ANY-method Man page
[,SingleCellExperiment,ANY,ANY-method Man page
[,SingleCellExperiment,ANY-method Man page
[<-,LinearEmbeddingMatrix,ANY,ANY,LinearEmbeddingMatrix-method Man page
[<-,SingleCellExperiment,ANY,ANY,SingleCellExperiment-method Man page
as.matrix,LinearEmbeddingMatrix-method Man page
as.matrix.LinearEmbeddingMatrix Source code
cbind,LinearEmbeddingMatrix-method Man page
cbind,SingleCellExperiment-method Man page
clearSizeFactors Man page
clearSizeFactors,SingleCellExperiment-method Man page
clearSpikes Man page
clearSpikes,SingleCellExperiment-method Man page
coerce,RangedSummarizedExperiment,SingleCellExperiment-method Man page
coerce,SummarizedExperiment,SingleCellExperiment-method Man page
colData,SingleCellExperiment-method Man page
convert_subset_index Source code
counts Man page
counts,SingleCellExperiment-method Man page
counts<- Man page
counts<-,SingleCellExperiment-method Man page
cpm Man page
cpm,SingleCellExperiment-method Man page
cpm<- Man page
cpm<-,SingleCellExperiment-method Man page
dim,LinearEmbeddingMatrix-method Man page
dimnames,LinearEmbeddingMatrix-method Man page
dimnames<-,LinearEmbeddingMatrix,ANY-method Man page
dimnames<-,LinearEmbeddingMatrix-method Man page
factorData Man page
factorData,LinearEmbeddingMatrix-method Man page
factorData<- Man page
factorData<-,LinearEmbeddingMatrix-method Man page
featureLoadings Man page
featureLoadings,LinearEmbeddingMatrix-method Man page
featureLoadings<- Man page
featureLoadings<-,LinearEmbeddingMatrix-method Man page
get_sf_field Source code
get_spike_field Source code
int_colData Man page
int_colData,SingleCellExperiment-method Man page
int_colData<- Man page
int_colData<-,SingleCellExperiment-method Man page
int_elementMetadata Man page
int_elementMetadata,SingleCellExperiment-method Man page
int_elementMetadata<- Man page
int_elementMetadata<-,SingleCellExperiment-method Man page
int_metadata Man page
int_metadata,SingleCellExperiment-method Man page
int_metadata<- Man page
int_metadata<-,SingleCellExperiment-method Man page
isSpike Man page
isSpike,SingleCellExperiment,NULL-method Man page
isSpike,SingleCellExperiment,character-method Man page
isSpike,SingleCellExperiment,missing-method Man page
isSpike<- Man page
isSpike<-,SingleCellExperiment,character-method Man page
le_show Source code
le_validity Source code
logcounts Man page
logcounts,SingleCellExperiment-method Man page
logcounts<- Man page
logcounts<-,SingleCellExperiment-method Man page
normcounts Man page
normcounts,SingleCellExperiment-method Man page
normcounts<- Man page
normcounts<-,SingleCellExperiment-method Man page
not_reddim_mat Source code
objectVersion Man page
objectVersion,SingleCellExperiment-method Man page
rbind,LinearEmbeddingMatrix-method Man page
rbind,SingleCellExperiment-method Man page
reducedDim Man page
reducedDim,SingleCellExperiment-method Man page
reducedDim<- Man page
reducedDim<-,SingleCellExperiment-method Man page
reducedDimNames Man page
reducedDimNames,SingleCellExperiment-method Man page
reducedDimNames<- Man page
reducedDimNames<-,SingleCellExperiment,character-method Man page
reducedDims Man page
reducedDims,SingleCellExperiment-method Man page
reducedDims<- Man page
reducedDims<-,SingleCellExperiment-method Man page
rowData,SingleCellExperiment-method Man page
rse_to_sce Source code
sampleFactors Man page
sampleFactors,LinearEmbeddingMatrix-method Man page
sampleFactors<- Man page
sampleFactors<-,LinearEmbeddingMatrix-method Man page
scat Source code
sce_show Source code
sce_validity Source code
show,LinearEmbeddingMatrix-method Man page
show,SingleCellExperiment-method Man page
sizeFactorNames Man page
sizeFactorNames,SingleCellExperiment-method Man page
sizeFactors Man page
sizeFactors,SingleCellExperiment-method Man page
sizeFactors<-,SingleCellExperiment-method Man page
spikeNames Man page
spikeNames,SingleCellExperiment-method Man page
standardize_DataFrames Source code
standardize_reducedDims Source code
tpm Man page
tpm,SingleCellExperiment-method Man page
tpm<- Man page
tpm<-,SingleCellExperiment-method Man page
weights Man page
weights,SingleCellExperiment-method Man page
weights<- Man page
weights<-,SingleCellExperiment-method Man page
drisso/SingleCellExperiment documentation built on Dec. 16, 2018, 3:26 p.m.