Files in dvera/rage
R-based Analysis of GEnomic data

.DS_Store
._.DS_Store
DESCRIPTION
Dockerfile
LICENSE
NAMESPACE
R/bam.2.bed.R R/bam.2.sam.R R/bam.cat.R R/bam.count.R R/bam.index.R R/bam.macs2.R R/bam.merge.R R/bam.multicov.R R/bam.parselengths.R R/bam.rmdup.R R/bam.sort.R R/bb.2.bed.R R/bcftools.call.R R/bcftools.merge.R R/bcftools.query.R R/bcftools.view.R R/bed.2.bb.R R/bed.2.bg.R R/bed.avglengths.R R/bed.breadth.R R/bed.cat.R R/bed.centers.R R/bed.clip.R R/bed.closest.R R/bed.closest2.R R/bed.coverage.R R/bed.dist.R R/bed.ends.R R/bed.genomecov.R R/bed.hist.R R/bed.intersect.R R/bed.liftover.R R/bed.makewindows.R R/bed.merge.R R/bed.overhangs.R R/bed.overlap.R R/bed.parselengths.R R/bed.parsestrands.R R/bed.recenter.R R/bed.recenter2.R R/bed.removechrom.R R/bed.sample.R R/bed.shuffle.R R/bed.sizes.R R/bed.slop.R R/bed.sort.R R/bed.spacing.R R/bed.structures.R R/bed.subtract.R R/bed.summary.R R/bed.wigaverages.R R/bed.words.R R/bg.2.bed.R R/bg.2.bw.R R/bg.2.wig.R R/bg.acf.R R/bg.cor.plot.R R/bg.cors.R R/bg.diff.R R/bg.discardOverlaps.R R/bg.dist.R R/bg.hist.R R/bg.iqr.R R/bg.ks.R R/bg.loess.R R/bg.map.R R/bg.normalize.iqr.R R/bg.ops.R R/bg.plot.R R/bg.plotchroms.R R/bg.ppois.R R/bg.qnorm.R R/bg.qnorm2.R R/bg.quantiles.R R/bg.scores.R R/bg.selectscores.R R/bg.sort.R R/bg.threshold.R R/bg.transform.R R/bg.unify.R R/bg.uniondiff.R R/bg.ztest.R R/bgzip.R R/bowtie.align.R R/bowtie2.R R/bw.2.bg.R R/bw.2.wig.R R/bwa.aln.R R/bwa.index.R R/bwa.sampe.R R/bwa.samse.R R/cfbg.make.R R/counts2matrix.R R/cuffdiff.2.clusters.R R/cuffdiff.2.matrix.R R/cuffdiff.R R/cuffdiff2kegg.R R/cuffdiff2list.R R/cufflinks.2.counts.R R/cufflinks.R R/cutadapt.paired.R R/deg.2.heatmap.R R/deindex.R R/dge.heatmap.R R/dge.log2.R R/dz.2.wig.R R/edger.R R/fastq.bwasw.R R/fastq.clip.R R/fastq.clip.fastx.R R/fastq.clip.paired.R R/fastq.consensus.R R/fastq.correct.R R/fastq.count.R R/fastq.fastqc.R R/fastq.filter.R R/fastq.forcemerge.R R/fastq.merge.R R/fastq.qc.R R/fastqp.plots.R R/fastx.qualitytrimmer.R R/fastx.trimmer.R R/gff.2.bed.R R/gff.2.bed2.R R/gff.2.bg.R R/gtf.2.fa.R R/hisat.R R/hub.add.R R/hub.bam.R R/hub.bed.R R/hub.modify.R R/hub.vcf.R R/hub.wig.R R/kallisto.quant.R R/mat.cor.R R/mat.heatmap.R R/mat.hist.R R/mat.iqr.R R/mat.iqrnorm.R R/mat.loess.R R/mat.make.R R/mat.ops.R R/mat.plotaverages.R R/mat.plotaverages2.R R/mat.plotmats.R R/mat.plotrows.R R/mat.qnorm.R R/mat.strandtosense.R R/mat.tilegrid.R R/mat.window.R R/mat2bw.R R/np.2.bed.R R/rage.hist.R R/rage.run.R R/read.bgs.R R/sam.2.bam.R R/sam.stats.R R/samtools.mpileup.R R/samtools.view.R R/scatterdens.R R/seqtk.seq.R R/seqtk.trimfq.R R/sra.2.fastq.R R/stringtie.R R/tabix.R R/tools.R R/tophat.2.matrix.R R/tophat.R R/vcf.2.bed.R R/vcf.2.bg.R R/vcf.2.fasta.R R/vcf.filter.R R/wig.2.bw.R README.md
Read-and-delete-me
junk/._findcontigs.R junk/anno.dist.R junk/bam.parseBySnp.R junk/bed.addcolor.R junk/bed.addstrand.R junk/bg.insertionPlot.R junk/bgtocontigs.R junk/downloadfile.R
junk/edger_extras.txt
junk/fastq.ssr.R junk/findcontigs.R junk/geosub.R junk/iseg.2.bed.R junk/isegtobed.R junk/isegtocoords.R junk/lsl.R junk/lslsr.R junk/lsltr.R junk/mat.colcors.R junk/mat.makenol.R junk/mat.plotsamplerows.R junk/matgrid.R junk/nolbg.R junk/printname.R junk/qteller.2.matrix.R junk/rage.R junk/sc.R junk/scorelist.2.mat.R junk/scrapcode.R junk/shead.R junk/stail.R junk/stdout.tsv.R junk/totalmem.R junk/track.compositewig.R junk/track.wig.R junk/vplot.draw.R junk/vplot.make.R junk/vplot.make.old.R junk/vplot.make.old2.R junk/vplot.rank.R man/bam.2.bed.Rd man/bam.2.sam.Rd man/bam.cat.Rd man/bam.count.Rd man/bam.index.Rd man/bam.merge.Rd man/bam.multicov.Rd man/bam.parselengths.Rd man/bam.sort.Rd man/bb.2.bed.Rd man/bed.2.bb.Rd man/bed.2.bg.Rd man/bed.coverage.Rd man/bed.genomecov.Rd man/bed.hist.Rd man/bed.merge.Rd man/bed.parselengths.Rd man/bed.sizes.Rd man/bed.sort.Rd man/bg.2.bw.Rd man/bg.hist.Rd man/bg.map.Rd man/bg.scores.Rd man/macs2.Rd man/mat.make.Rd man/sam.2.bam.Rd man/sam.stats.Rd
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dvera/rage documentation built on May 13, 2017, 9:50 a.m.