README.md

In dwinter/hyliter: Analyse hylite files

hyliter

R package to connect HyLiTE output to the DeSeq2 differential gene expression software

Warning

this is extremely in-devlopment code, that may well not do what you want it to, break unexpectedly or change in the future. If you still want to play with the existing functions, you can instal the package using devtools

devtools::install_github("dwinter/hyliter")

And use it, here H2 and H1 are hybirds with hylite output ditrectories and

parental_mod <- parental_DE ( read_hylite ("../H1.hylite/H1.hylite.expression.txt"), "P1", "P2")
H1_mod <- hybrid_DE ("../H1.hylite/", "H1")
H2_mod <- hybrid_DE ("../H2.hylite/", "H2")

dwinter/hyliter documentation built on Aug. 10, 2021, 6:35 p.m.