dynverse/cellTree: Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure

This packages computes a Latent Dirichlet Allocation (LDA) model of single-cell RNA-seq data and builds a compact tree modelling the relationship between individual cells over time or space.

Getting started

Package details

AuthorDavid duVerle [aut, cre], Koji Tsuda [aut]
Bioconductor views BiomedicalInformatics CellBiology Clustering FunctionalGenomics GO GeneExpression GeneSetEnrichment GraphAndNetwork Microarray RNASeq Sequencing SystemsBiology TimeCourse Visualization
MaintainerDavid duVerle <[email protected]>
URL http://tsudalab.org
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
dynverse/cellTree documentation built on Dec. 9, 2017, 12:23 a.m.