R/ti_ouijaflow.R

In dynverse/dynmethods: A collection of trajectory inference methods

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#' @title ouijaflow
#' 
#' @description
#' Will generate a trajectory using [ouijaflow](https://doi.org/10.1101/060442).
#' 
#' This method was wrapped inside a
#' [container](https://github.com/dynverse/ti_ouijaflow).
#' The original code of this method is available
#' [here](https://github.com/kieranrcampbell/ouija).
#' 
#' @references Campbell, K.R., Yau, C., 2016. A descriptive marker gene approach
#' to single-cell pseudotime inference.
#' 
#' @param iter . Domain: e^U(0.69, 10.82). Default: 1000. Format: integer.
#' 
#' @keywords method
#' 
#' @return A TI method wrapper to be used together with
#' \code{\link[dynwrap:infer_trajectories]{infer_trajectory}}
#' @export
ti_ouijaflow <- function(
    iter = 1000L
) {
  method_choose_backend(
    package_repository = NULL,
    package_name = NULL,
    function_name = NULL,
    package_version = NULL,
    container_id = "dynverse/ti_ouijaflow:v0.9.9.01"
  )(
    iter = iter
  )
}