Files in dyohanne/RepAn
Differential abundance Analysis for deep sequenced immune repertoire (Repseq) datasets
.Rbuildignore
DESCRIPTION
NAMESPACE
R/RepAnFns.R
R/RepDaAnalysisFns.R
R/data.R
README.md
data-raw/cdpbmcdata.R
data/CDGutRepseqObj.rda
data/CDRepseqObj.rda
data/referenceRepseqData.rda
man/CDRepseqObj.Rd
man/CountkmerFrequency.Rd
man/TopDAClonotypes.Rd
man/addItemToObject.Rd
man/compareAbundanceInPairedSamplesForRanking.Rd
man/compareClusterAbundancesPaired.Rd
man/compareClusterAbundancesUnPaired.Rd
man/computeVgeneEnrichement.Rd
man/cosineDist.Rd
man/createDecoyCDR3s_V2.Rd
man/determineWeight.Rd
man/extractDASubRepertoire.Rd
man/extractSubRepertoire.Rd
man/findDAClonotypesInDACluster.Rd
man/findDAClusters.Rd
man/findOptimalClusters.Rd
man/findOptimalK.Rd
man/getCenters.Rd
man/getClusterAbundancesTable.Rd
man/getClusterFoldChanges.Rd
man/getClusterLables.Rd
man/getClusterMatches.Rd
man/getDefined.Rd
man/getHasStop.Rd
man/getKmerFrequency.Rd
man/getMatchingCluster.Rd
man/getOutOfFrame.Rd
man/getPooledSamples.Rd
man/getProductive.Rd
man/getUnproductive.Rd
man/item.exists.Rd
man/loadBioconductorPacks.Rd
man/loadPacks.Rd
man/readSample.Rd
man/readSampleV2.Rd
man/resampleReferenceSamples.Rd
man/runDaAnalysis.Rd
man/sampleFromPooled.Rd
man/sampleWithFeatuersFromPooled.Rd
man/scaleSamples.Rd
man/setUp.Rd
man/shannonEntropy.Rd
